Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O10.2
         (1353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    35   0.15 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    35   0.15 
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    31   1.4  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    31   1.4  
AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical...    31   1.9  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   2.5  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    31   2.5  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   5.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 19/64 (29%), Positives = 23/64 (35%)
 Frame = +2

Query: 473 QKSXIPPPHLXSXXLFXKKPXNPXKXPKPXNPPXKXKXKPPPKKXKIXXKXFFPKXXPXX 652
           Q   +PPP      +    P  P   P+P  PP      PPP       +   P   P  
Sbjct: 259 QYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP--PGRTPGPPGMPGM 316

Query: 653 PPPP 664
           PPPP
Sbjct: 317 PPPP 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 19/64 (29%), Positives = 23/64 (35%)
 Frame = +2

Query: 473 QKSXIPPPHLXSXXLFXKKPXNPXKXPKPXNPPXKXKXKPPPKKXKIXXKXFFPKXXPXX 652
           Q   +PPP      +    P  P   P+P  PP      PPP       +   P   P  
Sbjct: 269 QYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP--PGRTPGPPGMPGM 326

Query: 653 PPPP 664
           PPPP
Sbjct: 327 PPPP 330


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 545 KXPKPXNPPXKXKXKPPPKKXKI 613
           K PKP   P + K KPPPKK ++
Sbjct: 863 KEPKPPKQPKEKKEKPPPKKKEM 885


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 545 KXPKPXNPPXKXKXKPPPKKXKI 613
           K PKP   P + K KPPPKK ++
Sbjct: 876 KEPKPPKQPKEKKEKPPPKKKEM 898


>AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.16 protein.
          Length = 227

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +2

Query: 539 PXKXPKPXNPPXKXKXKPPPKKXKIXXKXFFPKXXP----XXPPPP 664
           P    KP  PP + + K PP+K K+      P   P      PPPP
Sbjct: 137 PEVEKKPEEPPVEDEAKTPPEKPKVEEPAPAPAPAPAAVAPAPPPP 182


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 536 NPXKXPKPXNPPXKXKXKPPPK-KXKIXXKXF-FPKXXPXXPPPP 664
           +P   PKP  P  K K KP PK K K   K   FPK  P   P P
Sbjct: 33  SPMPFPKPM-PKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 524 KKPXNPXKXPKP-XNPPXKXKXKPPPK-KXKIXXKXFFPKXXPXXPPPP 664
           K   NP   PKP   P  K K KP PK K K   K   PK  P   P P
Sbjct: 158 KSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPK---PKPKPNPKPEP 203


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 663 GGGGXXGXXFGKKXFXKIFXFXGGGFXFXXXGGFXGLGXXWGFXGFFXXXIXXFKWGGG 487
           GGGG  G  FG      +    GGG+     GG+ G G   G  G +   +    +GGG
Sbjct: 153 GGGGGGGGDFGGYGGGGM---GGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGG 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,965
Number of Sequences: 27780
Number of extensions: 107447
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3808844148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)