Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O08.2
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...   105   2e-23
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    27   4.0  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   7.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   7.0  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  105 bits (251), Expect = 2e-23
 Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
 Frame = +1

Query: 373 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 552
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 553 QATMAAAERFKAPET------TATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXIV 714
           QA      + +A ET      T    DA    T                         +V
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIE-ESFEQEKAVDETGVDAKDIELV 142

Query: 715 MSQANVSRAKAVRALKNNQSDIVNAIMELTM 807
           M+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 143 MAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 1009 KKCGQPNHFXXXDCTXTTYDIFFHFEYTVQYIAYYACV 896
            +KC   N      CT   YDI+ +   T   + YY+C+
Sbjct: 38   QKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVPYYSCL 75


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 562 MAAAERFKAPETTATGNDASTTGTTVA 642
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 562 MAAAERFKAPETTATGNDASTTGTTVA 642
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,175
Number of Sequences: 5004
Number of extensions: 50879
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)