Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_O03.2
         (1340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   6.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 687 RQVSGLRNLXLRFXXD-LRVRXRXGTPAQLIXVMSXVEVTMSYFVSFHCN*XSTSG 523
           RQV  LR     +  D L    + G P Q++  +     T+  F + +CN  + +G
Sbjct: 171 RQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTG 226


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 687 RQVSGLRNLXLRFXXD-LRVRXRXGTPAQLIXVMSXVEVTMSYFVSFHCN*XSTSG 523
           RQV  LR     +  D L    + G P Q++  +     T+  F + +CN  + +G
Sbjct: 171 RQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTG 226


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 370 LAQXREHQHPRAVSHAVAFXXTISPSLSKEFIX*VQT 260
           +A  RE Q  ++++ A A    I P+L  + +  +QT
Sbjct: 257 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQT 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,180
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46344318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)