Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N22.2
         (1333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.47 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.63 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = -2

Query: 612 PXPXPKXXRLPPXXP----PPPXPTPXKXXXXXXXTPXPPP 502
           P P P    +PP  P    PPP P P          P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 585 LPPXXPPPPXPTPXKXXXXXXXTPXPPPXXK 493
           LPP  PPPP P P          P PP   K
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 612 PXPXPKXXRLPPXXPPPPXP 553
           P P P     PP  PPPP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,791
Number of Sequences: 5004
Number of extensions: 7650
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)