Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N21.2
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 22/64 (34%), Positives = 22/64 (34%)
 Frame = -1

Query: 822 GGFXKXPPXPXGXXGXVXXXXPGXEXGGPXGGFXGXXPGFFXXXWGFPPXXXGXXFXKXF 643
           GG    PP P G  G       G   GG  GGF G   GF     GF     G       
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGG-HGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 642 XGGG 631
            GGG
Sbjct: 254 FGGG 257


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 398 PPXPGXRGXGFXXPXPXPP 454
           PP PG  G G   P P PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.152    0.517 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,022
Number of Sequences: 5004
Number of extensions: 27131
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)