Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_N21.2
(1254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 41 0.002
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 40 0.005
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 37 0.029
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.82
01_01_0083 + 631196-631675 31 2.5
11_06_0610 - 25449085-25453284 30 4.4
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 30 4.4
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +2
Query: 398 PPXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGK 547
PP P RG G P PP P G G PPP GG+ GG+
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGR 1233
Score = 33.9 bits (74), Expect = 0.27
Identities = 29/97 (29%), Positives = 29/97 (29%)
Frame = +2
Query: 398 PPXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXX 577
PP P G G P PP GG PPP GG GG P
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGI-----GGVPPPPPVGG------LGGPPAPP--PPAG 1168
Query: 578 XXGXKPKXGPXGGXFPKXPPPXKXXKKXXPXXXGGKP 688
G P GG P PPP P G P
Sbjct: 1169 FRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAP 1205
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 39.5 bits (88), Expect = 0.005
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Frame = +2
Query: 401 PXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXXX 580
P P G G P P PP P G G G PPP G GG P +
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRG--GGGPPPPALPGGPRA 395
Query: 581 XGXKP-KXGPXGGXFPKXPPPXKXXKK 658
G P K P P K K
Sbjct: 396 RGPPPFKKSPGAAAAAAQADPNKAKLK 422
Score = 32.3 bits (70), Expect = 0.82
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Frame = +2
Query: 443 PXPPXXXXXPXXXGGGXGXPPP----XGGKXXXPKXGGKPXKKIXXKXXXXGXKPKXGPX 610
P PP P G G G PPP P G P G P
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
Query: 611 GGXFPKXPPPXK 646
GG + PPP K
Sbjct: 391 GGPRARGPPPFK 402
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 37.1 bits (82), Expect = 0.029
Identities = 24/64 (37%), Positives = 25/64 (39%)
Frame = +2
Query: 530 PKXGGKPXKKIXXKXXXXGXKPKXGPXGGXFPKXPPPXKXXKKXXPXXXGGKPQXXXKXP 709
PK G KP K G KPK P G PK P P K P G KP+ P
Sbjct: 157 PKPGPKPKPKPSPPKPKPGPKPKP-PKPGPKPKPPKPG-PKPKPKPPKPGPKPKPKPPKP 214
Query: 710 GXXP 721
G P
Sbjct: 215 GPKP 218
Score = 35.9 bits (79), Expect = 0.067
Identities = 25/69 (36%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = +2
Query: 437 PXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXXXXGXKPK-XGPXG 613
P P P P G PP G K PK G KP K G KPK P
Sbjct: 159 PGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKP----KPKPPKPGPKPKPKPPKP 214
Query: 614 GXFPKXPPP 640
G PK PP
Sbjct: 215 GPKPKPGPP 223
Score = 35.1 bits (77), Expect = 0.12
Identities = 28/84 (33%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Frame = +2
Query: 401 PXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXXX 580
P PG + P P P P G PP G PK KP K K
Sbjct: 157 PKPGPKPK--PKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPP-KPGPKPKPKPPK 213
Query: 581 XGXKPKXGPXGG----XFPKXPPP 640
G KPK GP FPK P P
Sbjct: 214 PGPKPKPGPPQPWWPIPFPKPPCP 237
Score = 30.7 bits (66), Expect = 2.5
Identities = 26/77 (33%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +2
Query: 482 GGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXXXXGXKPKXGPXGGXFPKXPPPXKXXK-K 658
G G P PK G KP K G KPK P G PK PP K K
Sbjct: 156 GPKPGPKPKPKPSPPKPKPGPKP------KPPKPGPKPKP-PKPGPKPKPKPPKPGPKPK 208
Query: 659 XXPXXXGGKPQXXXKXP 709
P G KP+ P
Sbjct: 209 PKPPKPGPKPKPGPPQP 225
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.82
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = +2
Query: 398 PPXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKPXKKIXXKXX 577
PP P P P PP P G PPP G P G
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 578 XXGXKPKXGPXGG 616
G P P GG
Sbjct: 373 KKGGPPPPPPKGG 385
Score = 32.3 bits (70), Expect = 0.82
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 398 PPXPGXRGXGFXXPXPXP-PXXXXXPXXXGGGXGXPPPXGGKXXXPKXGGKP 550
PP P +G P P P P GG PPP GG P G P
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
>01_01_0083 + 631196-631675
Length = 159
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 362 GGGGXVFXXXKXPPXPGXRGXGFXXPXPXPP 454
GGGG + P G G GF P P PP
Sbjct: 82 GGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 4.4
Identities = 21/91 (23%), Positives = 23/91 (25%), Gaps = 1/91 (1%)
Frame = +2
Query: 398 PPXPGXRGXGFXXPXPXPPXXXXXPXXXGGGXGXPPP-XGGKXXXPKXGGKPXKKIXXKX 574
PP P G P PP P PPP G P P +K
Sbjct: 628 PPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTP 687
Query: 575 XXXGXKPKXGPXGGXFPKXPPPXKXXKKXXP 667
P G P P +K P
Sbjct: 688 ESESSSPPPPAPEGHMPSPPKSTPPVEKSPP 718
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 29.9 bits (64), Expect = 4.4
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = -2
Query: 536 FXGXPXXPXXGGXNPXPXPXXXGPGXXX--GGXGXGPXNXXPXPXGXXXFXXXXKPPXPP 363
F G P P GG P GPG GG G G P G F PP PP
Sbjct: 537 FPGRPPQP--GGMFPMGLEMMMGPGRGPLMGGLGMGGPGRPNRPVGMAPF----MPPPPP 590
Query: 362 P 360
P
Sbjct: 591 P 591
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.152 0.517
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,654
Number of Sequences: 37544
Number of extensions: 428359
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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