Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N20.2
         (1308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   1.9  

>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect(2) = 1.9
 Identities = 16/57 (28%), Positives = 20/57 (35%)
 Frame = +1

Query: 340 GXGGGXXGFXXXXKXXXXXGKGVGXWGXXPXPXXXTRXPRXSGXGKGXXXXXGGKXG 510
           G GGG  G+          G+G G  G         R     G G+G     GG+ G
Sbjct: 70  GYGGGGGGYGGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGGGGGGRGGGGRGGGRDG 126



 Score = 21.8 bits (44), Expect(2) = 1.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 319 WLXFXFXGXGGGXXG 363
           WL   F G GGG  G
Sbjct: 37  WLVVFFVGGGGGGRG 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.148    0.494 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,208
Number of Sequences: 37544
Number of extensions: 169282
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4085517852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)