Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N20.2
         (1308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   7.2  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   7.2  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/60 (25%), Positives = 19/60 (31%)
 Frame = -2

Query: 518 FGXPXFPPXXX*XPXPXPXXRGXRVXXXGNGXXPXXPTPFPXXXXXXXXXXKPXXPPPXP 339
           +G P   P     P P P  +   +    +   P  P P P           P  PPP P
Sbjct: 598 YGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/60 (25%), Positives = 19/60 (31%)
 Frame = -2

Query: 518 FGXPXFPPXXX*XPXPXPXXRGXRVXXXGNGXXPXXPTPFPXXXXXXXXXXKPXXPPPXP 339
           +G P   P     P P P  +   +    +   P  P P P           P  PPP P
Sbjct: 424 YGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.148    0.494 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,974
Number of Sequences: 27780
Number of extensions: 109532
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3652743978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)