Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N18.2
         (1265 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   3.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   4.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect(2) = 3.0
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -1

Query: 1049 PPPPPXXRXXPXXAXXXXXFPXXPPXXXXPXXPXXXXXPXPP 924
            PPPPP     P  A      P   P    P  P     P PP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-----PPPP 768



 Score = 21.4 bits (43), Expect(2) = 3.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 860 PLSPXXGRFLXAXKPPXPPPXP 795
           P  P       A  PP PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 59  PRLFLPSRNRXXCSYHSLILNSFNLXNVFVIVIYKFVSFVINVHNVNL 202
           P L   + N    S+ S+ LNSF   N F+  + +  S  +++H  +L
Sbjct: 155 PLLDTLTPNSLESSFASISLNSFTSANEFIQFLKRLASSKLSIHTFDL 202


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 1/84 (1%)
 Frame = +1

Query: 802  GGGXGGFXAXRXRPXXGERGXXXGXXFRFXXXXXXXPGXXXGG-XGXXXXXGXXGXXKXG 978
            GGG GGF      P  G  G      F          G   GG  G     G  G    G
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 979  GXXGKXXXXXAXXGXNRKXGGGGG 1050
               G         G     GG GG
Sbjct: 247  FGGGLGGFGGGPGGFGGGPGGHGG 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,893
Number of Sequences: 5004
Number of extensions: 41444
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)