Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N18.2
         (1265 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    28   0.50 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   0.88 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   4.7  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 469 YHDYNHNNSTMSRLDY 516
           YHD+NH+NS MS +++
Sbjct: 456 YHDHNHHNSPMSPINF 471


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 469  YHDYNHNNSTMSRLDYCIN 525
            YH+  +NNS M RL+YCI+
Sbjct: 3000 YHNITNNNSVM-RLEYCID 3017


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
            binding protein protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 19/79 (24%), Positives = 22/79 (27%)
 Frame = -2

Query: 1156 PXGXRGXPXXXXSXRVXPPXXGXXFXXXSGGGPXXNPPXPPXXGXGXXXPXXPXFFXXXP 977
            P G  G P      +  PP  G  +    G      P  PP    G      P      P
Sbjct: 194  PPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPP----GAVPGMQPGMQPRPP 249

Query: 976  RFXGXPXPPLXXXXPXPXP 920
               G   PP+    P   P
Sbjct: 250  SAQGMQRPPMMGQPPPIRP 268


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,711
Number of Sequences: 2352
Number of extensions: 13073
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 145105185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)