Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N17.2
         (1325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603...    33   0.51 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.6  

>04_04_1184 +
           31558678-31558707,31559485-31559644,31559732-31560394,
           31560512-31560956,31561090-31561171,31561319-31561534
          Length = 531

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 1   VXXRPLQGILXTSPSSAPS--VLKDVSY*KVLPKILLKMTVCSMNGCHSTSEKHKK 162
           +  RP+Q +   SP+S+ S  +L+ +S+    PK++    VC++N    TSE   K
Sbjct: 212 IIPRPMQNMKRPSPASSASRSILERLSFGSHQPKLVRHADVCTVNNAGVTSEYQTK 267


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 787 CWRFXIGSAPLTSITKIDAQVXGGEXRXDYKDTRRFPLEAPSCALLFRP 933
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,296,690
Number of Sequences: 37544
Number of extensions: 463503
Number of successful extensions: 1046
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4155355764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)