Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N15.2
         (1283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    64   5e-11
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          36   0.016
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    30   0.79 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    29   1.4  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    27   4.2  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   9.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   9.8  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
 Frame = +2

Query: 341 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 496
           G A L    P   Y+KY   W    Q+  YL  L  W   L+K +     L S   + +I
Sbjct: 83  GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139

Query: 497 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 676
           L V     +  FHL IE YL  +L++CSEL+R +VNSV  G+Y  P      + ++++ F
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 1/172 (0%)
 Frame = +2

Query: 155 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKA 334
           F  F+  L ++Q+ RE I  + +E+   S+    +L     ++    P       +FEK 
Sbjct: 5   FLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKK 64

Query: 335 -HDGYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP 511
            H     LK  +   +  K+        Q Y   +    WL+ G L S +  +  + ++ 
Sbjct: 65  IHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKDSSFRISINF 124

Query: 512 VELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELN 667
           +           DY++G+  M  E+ R  V + ++   ++  +  KF+  L+
Sbjct: 125 I-----------DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLH 165


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 359 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 535
           DA+     F    H  F+T  Y Y I  T+ + KG   +   TM + L    +   +   
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196

Query: 536 LDIEDYLIGLLTMCSELSR 592
           +D   Y+   L +   LSR
Sbjct: 197 IDFPIYVFSSLFLYHPLSR 215


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 318 RRALPHAGEMPASL*CITWSTVVASREIWSTSLHI 214
           RR +P   E PA   C++W+ V  +  +WS+  HI
Sbjct: 128 RRCIPD--EHPAKRLCLSWAIVGMNAWVWSSVFHI 160


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 170 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 283
           ++LD+  E+   + T CK+VD+I ++   ++  I   E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +2

Query: 113 KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQISREATTVLQVIHYN 280
           K+  +C NE  NK++    K+++ ++++    +  I+ IC ++ Q        L+     
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ-PNAFQIFLKENSKR 319

Query: 281 EAGISPACGKARLLFEKAHDGYARLKDA 364
              + P      L+ +K  D Y R KDA
Sbjct: 320 LRKLHPHITHKELM-KKLSDEYHRTKDA 346


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 177 STKNKNYARRFGLYVKRLTKFLGK 248
           STK    A  +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,759
Number of Sequences: 5004
Number of extensions: 66407
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)