Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_N13.2
(1279 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 69 3e-11
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 69 3e-11
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 69 3e-11
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 69 3e-11
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 9.0
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 9.0
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 9.0
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 9.0
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 9.0
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 9.0
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 69.3 bits (162), Expect = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNYIV 402
ILWKK+ VA ATT+SIF NN LFL VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 69.3 bits (162), Expect = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNYIV 402
ILWKK+ VA ATT+SIF NN LFL VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 69.3 bits (162), Expect = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNYIV 402
ILWKK+ VA ATT+SIF NN LFL VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 69.3 bits (162), Expect = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNYIV 402
ILWKK+ VA ATT+SIF NN LFL VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 259 ILWKKHXVAXXXATTYSIFXNNALFLTXVILSSFYILRTFTPTVNY 396
++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3038 VIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,376,513
Number of Sequences: 237096
Number of extensions: 1778304
Number of successful extensions: 6042
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6042
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18330394590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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