Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N12.2
         (1274 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...    34   0.96 
BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.        34   0.96 
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...    34   0.96 
AK128180-1|BAC87313.1|  556|Homo sapiens protein ( Homo sapiens ...    31   9.0  
AK125949-1|BAC86357.1| 1014|Homo sapiens protein ( Homo sapiens ...    31   9.0  

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 170 SASXLWFHXARAXLXSAXPGFSVXXIAXKGGAIWXSM 280
           SA  LW + +R  + S  PG S+  ++ K G IW  M
Sbjct: 552 SAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGM 588


>BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.
          Length = 633

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 170 SASXLWFHXARAXLXSAXPGFSVXXIAXKGGAIWXSM 280
           SA  LW + +R  + S  PG S+  ++ K G IW  M
Sbjct: 552 SAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGM 588


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 170 SASXLWFHXARAXLXSAXPGFSVXXIAXKGGAIWXSM 280
           SA  LW + +R  + S  PG S+  ++ K G IW  M
Sbjct: 552 SAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGM 588


>AK128180-1|BAC87313.1|  556|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46303 fis, clone TESTI4037228. ).
          Length = 556

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 368 HRHWHCKMXGILXIAPWP 315
           HR W C++ G+L +AP+P
Sbjct: 427 HRSWDCRISGVLAVAPFP 444


>AK125949-1|BAC86357.1| 1014|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43961 fis, clone TESTI4016812. ).
          Length = 1014

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 368 HRHWHCKMXGILXIAPWP 315
           HR W C++ G+L +AP+P
Sbjct: 376 HRSWDCRISGVLAVAPFP 393


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,058,635
Number of Sequences: 237096
Number of extensions: 1536823
Number of successful extensions: 1999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18275348360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)