Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N12.2
         (1274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 716  ILNQEMNYLIAFYKQNTSCS*R*FQLSLNVNQNQCQMHFIQTLES 582
            IL    N L+ F     + + R  +LSL  N   C+  F+Q L S
Sbjct: 894  ILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSS 938


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 865 LYS*PSLVKFAVTLWMLILRYTFDWFYQNFYVCTN 969
           ++S P+++   + + M ILR + D   +NF  C++
Sbjct: 88  VFSSPTILISYIYILMAILRMSADGGCRNFSTCSS 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,549
Number of Sequences: 438
Number of extensions: 3082
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43702932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)