Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N08.2
         (1271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   1.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    24   3.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    24   3.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   3.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    24   3.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 416 EFVRRSTIGHWALRKRLCADLPAE 345
           EF R  T    AL K+LC D PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 RSAHKRFRKAQCPIVERLTNSLMXHGRNNGKKLMAVRI 468
           R   +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 68  RDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 RSAHKRFRKAQCPIVERLTNSLMXHGRNNGKKLMAVRI 468
           R   +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 68  RDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 RSAHKRFRKAQCPIVERLTNSLMXHGRNNGKKLMAVRI 468
           R   +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 68  RDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 RSAHKRFRKAQCPIVERLTNSLMXHGRNNGKKLMAVRI 468
           R   +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 68  RDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 RSAHKRFRKAQCPIVERLTNSLMXHGRNNGKKLMAVRI 468
           R   +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 301 RDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = -3

Query: 714 CNTLCDCFNISECSLTCTCAQKPDCLVD 631
           C  LC C +   C    TC     C  D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,006
Number of Sequences: 438
Number of extensions: 3744
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)