Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_N06.2
         (1282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    33   0.004
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   3.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   10.0 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   10.0 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   10.0 

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 33.5 bits (73), Expect = 0.004
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 530 VNLLGAMRVISAFLPEIRKTAIETTSKPKPRIINVGSHCGLQPLPAFA---AYSASKAGL 700
           +NLLG   +I   L  ++K  I         I+N+    GL  LP      AY ASK  L
Sbjct: 114 INLLGLTCMIQEVLKLMKKKGINNGI-----IVNINDASGLNLLPMNRNRPAYLASKCAL 168

Query: 701 LALTRCL--HLEHSEHGLAVIAFVP 769
             LT CL   L   E  + VI+  P
Sbjct: 169 TTLTDCLRSELAQCESNIKVISISP 193


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 647 GLQPLPAFAAYSASKAGLLALTRCLHLEHSEHG 745
           GLQP P  A  S   AGL +    + L H  HG
Sbjct: 332 GLQP-PDLAGTSQGSAGLPSAILAMRLSHPLHG 363


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
            receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 1007 ESWKYMFIIINEMXLXLXFI 1066
            E WKY+ ++I+ + L + F+
Sbjct: 469  EDWKYVAMVIDRLQLYIFFL 488


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 668 FAAYSASKAGLLALTRCLHLEHSEHGLAVIAFVPGGFV 781
           FA Y  +K GL+ + R   +E  E  +    F PG F+
Sbjct: 449 FAVYQ-TKVGLITILRNHKVEVCEKTIIPYEFDPGAFL 485


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 863 YGNKIESLNNYLELASGXGK-FDSMHD 940
           +GN IESL NY ++     K  D+ H+
Sbjct: 579 HGNFIESLGNYYKIRDSKVKTLDASHN 605


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 535 IHMDRAFYHRCCHPXVLS 482
           +++ RAF   C HP V S
Sbjct: 28  MYLVRAFCRNCIHPTVFS 45


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 535 IHMDRAFYHRCCHPXVLS 482
           +++ RAF   C HP V S
Sbjct: 476 MYLVRAFCRNCIHPTVFS 493


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +2

Query: 476 TVGKYXWMTASMIESPVHVNLLGAMRV-ISAFLPEIRKTA----IETTSKPKPRIINVGS 640
           ++ K    TA M + P +  +     V +SA +  +R  A      +   P P I N+ +
Sbjct: 366 SIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSN 425

Query: 641 HCGLQPLP 664
             G+ PLP
Sbjct: 426 MSGMPPLP 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,458
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43943058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)