Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_N04.2
(1357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.16
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 159 PPPXXXXXXXPPPPPPPAXXXPAPVSP 239
PPP PPPPPPP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 159 PPPXXXXXXXPPPPPPP 209
PPP PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 159 PPPXXXXXXXPPPPPPP 209
PPP PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 160 PPQXXXXXXPXPPPPPPXXSXXPRXPP 240
PP P PPPPPP + PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 160 PPQXXXXXXPXPPPPPPXXSXXPRXPP 240
PP P PPPPP P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 159 PPPXXXXXXXPPPPPPPA 212
PP PPPPPPPA
Sbjct: 767 PPGVAGAGPPPPPPPPPA 784
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 192 PPPPPPAXXXPAP 230
PPPPPPA P P
Sbjct: 732 PPPPPPAVIVPTP 744
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 160 PPQXXXXXXPXPPPPPPXXS 219
PP P PPPPPP S
Sbjct: 767 PPGVAGAGPPPPPPPPPAVS 786
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 159 PPPXXXXXXXPPPPPPP 209
PPP PPPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 187 PXPPPPPPXXSXXPRXPP 240
P PPPPPP + PP
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 1.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 189 PPPPPPPA 212
PPPPPPPA
Sbjct: 191 PPPPPPPA 198
Score = 22.2 bits (45), Expect(2) = 1.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 192 PPPPPPAXXXP 224
PPPPPP P
Sbjct: 238 PPPPPPPTLPP 248
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = +1
Query: 160 PPQXXXXXXPXPP---PPPPXXSXXPRXPP 240
PPQ P PP PPPP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 598 PPXXXXXXPPPXXXXXXPPPXXPP 527
PP PPP PPP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 189 PPPPPPPAXXXPAPVSP 239
P PPPPP P P +P
Sbjct: 1705 PTPPPPPMSVPPPPSAP 1721
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 189 PPPPPPPAXXXPAPVSP 239
PPPPP PA AP P
Sbjct: 6 PPPPPAPAPAAAAPAPP 22
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 242 PGGXRGXXXXXGGGGGGXGXXXXXXWGG 159
PGG G GGG GG G GG
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.146 0.472
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,562
Number of Sequences: 5004
Number of extensions: 12368
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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