Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M23.2
         (1284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    91   4e-19
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   9.8  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = +3

Query: 87  PKTAQAVLQ-KXSMPQSPQGLTVQKVQGKGTLPRXRSRYXRKQQGYGGQSKPIFXXXXXX 263
           PKT +     K     +   +T  K      L + + RY RKQ G+GGQ+KP+F      
Sbjct: 5   PKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKV 64

Query: 264 XXXIVLRLECADCKVXSQVALKXCKHFELGGDKKRKGQMIQF 389
              +VLRLEC  CK  +Q+ LK CKHFELGG+KK KG  IQF
Sbjct: 65  TKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 165 GKGTLPRXRSRYXRKQQGYGGQS 233
           G GT+P   +++ + QQGY  QS
Sbjct: 760 GYGTMPYNNNKFGQPQQGYMSQS 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,567
Number of Sequences: 5004
Number of extensions: 40233
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)