Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M23.2
         (1284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    91   2e-18
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    91   2e-18
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    29   7.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 43/101 (42%), Positives = 56/101 (55%)
 Frame = +3

Query: 87  PKTAQAVLQKXSMPQSPQGLTVQKVQGKGTLPRXRSRYXRKQQGYGGQSKPIFXXXXXXX 266
           PK  +          +   +T  K   +    + R RY RKQ G+GGQ+KPIF       
Sbjct: 5   PKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTT 64

Query: 267 XXIVLRLECADCKVXSQVALKXCKHFELGGDKKRKGQMIQF 389
             IVLR+EC +CK   Q+ +K CKHFELGG KK +GQ+IQF
Sbjct: 65  KKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 43/101 (42%), Positives = 56/101 (55%)
 Frame = +3

Query: 87  PKTAQAVLQKXSMPQSPQGLTVQKVQGKGTLPRXRSRYXRKQQGYGGQSKPIFXXXXXXX 266
           PK  +          +   +T  K   +    + R RY RKQ G+GGQ+KPIF       
Sbjct: 5   PKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTT 64

Query: 267 XXIVLRLECADCKVXSQVALKXCKHFELGGDKKRKGQMIQF 389
             IVLR+EC +CK   Q+ +K CKHFELGG KK +GQ+IQF
Sbjct: 65  KKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 113 LQDGLRCFGTGTXXECVRHESN 48
           LQDGL C GTG   EC+    N
Sbjct: 182 LQDGLGCCGTGKSGECLNFGEN 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,791
Number of Sequences: 27780
Number of extensions: 250843
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)