Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M21.2
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 240 1e-63
07_01_0578 + 4295386-4296489,4297394-4297507 237 1e-62
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 36 0.052
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.27
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.36
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.84
08_02_1278 - 25838146-25839411 32 0.84
03_05_0366 - 23505755-23506441 31 1.9
11_03_0178 + 11280174-11280342,11280429-11280497,11281494-112817... 31 2.6
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 2.6
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 4.5
08_02_1285 - 25881091-25881798 29 5.9
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 5.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 240 bits (588), Expect = 1e-63
Identities = 118/215 (54%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Frame = +2
Query: 134 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 310
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 311 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 490
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 491 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 670
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 671 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 775
K S +RAGKGKMRNRR I RKGPLI++ +
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTE 217
Score = 69.7 bits (163), Expect = 5e-12
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +3
Query: 783 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLXPLFGSWKTPSKQXXN 962
+ +AFRN+PGV+ APGGHLGRFVIWT+ AF +L ++G + TP+ +
Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280
Query: 963 XNLXQPKMA 989
L +PKMA
Sbjct: 281 FVLPRPKMA 289
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 237 bits (581), Expect = 1e-62
Identities = 116/213 (54%), Positives = 143/213 (67%), Gaps = 2/213 (0%)
Frame = +2
Query: 143 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 316
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 317 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 496
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 497 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 676
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 677 KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD 775
K S +R GKGKMRNRR I RKGPLI++ +
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTE 218
Score = 72.5 bits (170), Expect = 6e-13
Identities = 32/69 (46%), Positives = 45/69 (65%)
Frame = +3
Query: 783 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLXPLFGSWKTPSKQXXN 962
+ +AFRN+PGV+ APGGHLGRFVIWT+SAF +L ++G+++ PS +
Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281
Query: 963 XNLXQPKMA 989
L +PKMA
Sbjct: 282 FILPRPKMA 290
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 36.3 bits (80), Expect = 0.052
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +1
Query: 52 PSWRMVFITAISVSFGGXASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHT 231
PSWR++ S + ASL N + P+F V G SQA V + GAHT
Sbjct: 111 PSWRVLLGRRDSTT----ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHT 166
Query: 232 SGPGQ*CSRF 261
G Q C F
Sbjct: 167 VGQAQ-CQNF 175
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.27
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 323 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 433
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.36
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 429 PPRHMLPKAP*PDLWVPPP 373
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 106 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 261
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.84
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 652 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 545
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 209 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 385
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 386 HRSGQGA 406
+ + + A
Sbjct: 168 NDNDEEA 174
>11_03_0178 +
11280174-11280342,11280429-11280497,11281494-11281703,
11282314-11282435,11282436-11282633
Length = 255
Score = 30.7 bits (66), Expect = 2.6
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 680 VYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGSDTRLPQHPR--CGAPEC*QAEPTEA 853
+ K Q L G RRR R+GP + +G R H + CG P C Q EA
Sbjct: 84 ISKLQTLEGGVSPPVLRRREPRQGPGLEMRHGRGWGQRYHTHGQLPCGEPPCHQ----EA 139
Query: 854 GSGRSSW 874
SG + W
Sbjct: 140 RSGPARW 146
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 646 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 479
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 478 DATVPAP 458
A AP
Sbjct: 134 SAPAKAP 140
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 106 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 261
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1285 - 25881091-25881798
Length = 235
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 169 EERDGAGCSQAPPVRVQGAHTSGPG 243
EE DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 106 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 261
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,112,879
Number of Sequences: 37544
Number of extensions: 641080
Number of successful extensions: 2070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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