Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M19.2
         (1302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...   149   1e-36
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   3.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   4.3  

>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score =  149 bits (360), Expect = 1e-36
 Identities = 64/115 (55%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
 Frame = +2

Query: 575 FDRAKMEDLIKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQMLEV 754
           FDR + E+L+K+RFF+  SF IYGGI+G +D+GP G AL+SN++ +W+K F+++E MLEV
Sbjct: 10  FDRTQFEELMKKRFFFSPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEV 69

Query: 755 ECSILTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLE-KIKSDKNTK 916
           +CS+LTP  VLK SGHV++FAD M KD  TGE FR DHL++  LE ++K DK  +
Sbjct: 70  DCSMLTPHEVLKTSGHVDKFADWMCKDPATGEIFRADHLVEEVLEARLKGDKEAR 124


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 709 LMEEVFYSSGTNVRGRMLNSYSRTCTQSLRSCGEICRLDD 828
           L+  V    G ++ GR+L+  SR  T   +  G  CR+DD
Sbjct: 808 LVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDD 847


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 465 LSFLTKXPCAFTLALKGARIASSLGSAIMIARKGFGILSFR 343
           L FLT  PC+FT+    AR+ S  G + +  ++    +S R
Sbjct: 56  LPFLTLSPCSFTICSLRARLHSLHGPSTVFLKRETSQISAR 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,502
Number of Sequences: 5004
Number of extensions: 58612
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)