Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M19.2
         (1302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...   238   5e-63
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...   238   5e-63

>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score =  238 bits (583), Expect = 5e-63
 Identities = 113/200 (56%), Positives = 141/200 (70%)
 Frame = +2

Query: 383 MADPKLEAILAPLSANVKAQGXLVRKLKXXKAPEIDIKKAVXXXXXXXXXXXXXXXXXXX 562
           MA P++EA LAPL A VK  G L+R LK   AP+IDI KAV                   
Sbjct: 1   MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 60

Query: 563 XXXXFDRAKMEDLIKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQ 742
               FDR K+EDL+KRRFFYDQSFAIYGG+TG +DFGPMGC+LK+NM+  W+K FIL+E 
Sbjct: 61  KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILEEG 120

Query: 743 MLEVECSILTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLEKIKSDKNTKIE 922
           MLEV+C+ LTPEPVLKASGHV+RFAD M KD+K GECFR DHLIK  +EK+ +DK T   
Sbjct: 121 MLEVDCTSLTPEPVLKASGHVDRFADWMVKDMKNGECFRADHLIKNSIEKLLNDKKTSAA 180

Query: 923 LKAEIEDILIKLDGMNADEM 982
           +K + +D+L +L+G +  +M
Sbjct: 181 VKQDGQDVLARLEGFDNKDM 200


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score =  238 bits (583), Expect = 5e-63
 Identities = 113/200 (56%), Positives = 141/200 (70%)
 Frame = +2

Query: 383 MADPKLEAILAPLSANVKAQGXLVRKLKXXKAPEIDIKKAVXXXXXXXXXXXXXXXXXXX 562
           MA P++EA LAPL A VK  G L+R LK   AP+IDI KAV                   
Sbjct: 65  MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 124

Query: 563 XXXXFDRAKMEDLIKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQ 742
               FDR K+EDL+KRRFFYDQSFAIYGG+TG +DFGPMGC+LK+NM+  W+K FIL+E 
Sbjct: 125 KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILEEG 184

Query: 743 MLEVECSILTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLEKIKSDKNTKIE 922
           MLEV+C+ LTPEPVLKASGHV+RFAD M KD+K GECFR DHLIK  +EK+ +DK T   
Sbjct: 185 MLEVDCTSLTPEPVLKASGHVDRFADWMVKDMKNGECFRADHLIKNSIEKLLNDKKTSAA 244

Query: 923 LKAEIEDILIKLDGMNADEM 982
           +K + +D+L +L+G +  +M
Sbjct: 245 VKQDGQDVLARLEGFDNKDM 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,755
Number of Sequences: 27780
Number of extensions: 319228
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3631930622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)