Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M18.2
(1279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0177 - 14770777-14772045 31 2.6
12_02_1219 + 27096477-27096590,27096704-27097078 30 3.4
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 30 3.4
06_03_1326 - 29355467-29355817 30 3.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 5.9
08_02_0780 + 21148283-21148634,21148730-21149146,21150194-21150534 29 5.9
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.9
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 29 5.9
01_06_0046 + 25943183-25943590 29 5.9
07_03_1533 + 27523811-27524710 29 7.9
>07_03_0177 - 14770777-14772045
Length = 422
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 940 GKGGGGXXXXGGXXGXXXKKKKXXGGGXXPXKRGXKXXXFXKXGGXG 1080
G GGGG GG G GGG K G F K GG G
Sbjct: 78 GFGGGGGFGGGGGGGLGGGGGGGLGGGGGFGKGGGVGGGFGKGGGFG 124
Score = 30.7 bits (66), Expect = 2.6
Identities = 19/47 (40%), Positives = 19/47 (40%)
Frame = +1
Query: 940 GKGGGGXXXXGGXXGXXXKKKKXXGGGXXPXKRGXKXXXFXKXGGXG 1080
G GGGG GG G K GGG K G F K GG G
Sbjct: 226 GLGGGGGLGGGGGLGGGIGKGGGLGGGI--GKGGGLGGGFGKGGGLG 270
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
GGGGG GGG +++ GGGG
Sbjct: 107 GGGGGYGGGGGGGYGQRREGGYGGGG 132
>10_08_0161 + 15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGGXPXKKGXKK 1049
G GGG GG KK+ GGGG G +K
Sbjct: 234 GAGGGDKKDGGGGDKKDKKEGGGGGGDKKDAGGEK 268
>06_03_1326 - 29355467-29355817
Length = 116
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGGXPXKKG 1040
GGGGG GGG + GGGG K G
Sbjct: 16 GGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGG 47
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -2
Query: 1080 PXPPX-FXKXXXFXPPFXGXXPPPXXFFFFXXXPXXPPXXXXPPPP 946
P PP F + PP PPP F F P PPPP
Sbjct: 213 PWPPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPP 258
>08_02_0780 + 21148283-21148634,21148730-21149146,21150194-21150534
Length = 369
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
GGGGG GGG + GGGG
Sbjct: 50 GGGGGGGNGGGGGDHQESSSSGGGGG 75
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
GGGGG GGG ++ GGGG
Sbjct: 201 GGGGGGGLGGGGGEGGAPERVIGGGG 226
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
GGGGG GGG ++ GGGG
Sbjct: 202 GGGGGGLGGGGGEGGAPERVIGGGGG 227
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
G G G GGG K KK GGGG
Sbjct: 205 GNGNGGGGGGGGGGKKKGKKGGGGGG 230
Score = 29.1 bits (62), Expect = 7.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGG 1022
G GGG GGG KK GGGG
Sbjct: 207 GNGGGGGGGGGGKKKGKKGGGGGGGG 232
>01_06_0046 + 25943183-25943590
Length = 135
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 1041 PPFXGXXPPPXXFFFFXXXPXXPPXXXXPPPP 946
PP PPP +++ P P PPPP
Sbjct: 50 PPPPALPPPPPYYYYSPPPPAYYPGSYCPPPP 81
>07_03_1533 + 27523811-27524710
Length = 299
Score = 29.1 bits (62), Expect = 7.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 945 GGGGGXXXGGGXXXXXKKKKXXGGGGXPXKKGXKK 1049
GGGGG GGG GGGG ++ +K
Sbjct: 96 GGGGGGGGGGGDDSGGDDGGGGGGGGDGDRRSNRK 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,820
Number of Sequences: 37544
Number of extensions: 285012
Number of successful extensions: 5491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3606
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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