Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M18.2
         (1279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    31   1.3  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -2

Query: 1074 PPXFXKXXXFXPPFXGXXPPPXXFFFFXXXPXXPPXXXXPPPP 946
            PP         PP  G  PPP   F     P  P     PPPP
Sbjct: 66   PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108



 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -2

Query: 1080 PXPPXFXKXXXFXPPFXGXXPPPXXFFFFXXXPXXPPXXXXPPPP 946
            P PP F       PP  G  PPP   F     P  P      P P
Sbjct: 85   PPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQP 129


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
            protein F13C5.2 protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 951  GGGXXXGGGXXXXXKKKKXXGGGGXPXKKGXKK 1049
            GGG   GG       K    G GG P K+G KK
Sbjct: 68   GGGTGRGGRGRPRGSKNSDGGAGGPPAKRGRKK 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,142
Number of Sequences: 27780
Number of extensions: 168332
Number of successful extensions: 1452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)