Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M16.2
(1255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.012
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.19
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.44
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 9.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = -2
Query: 720 PPPPPXFXFXPXLXPFFXNFFXXXPPLFXGXPXPPXXG--GXXPPPPPXPXXXVFFXXXX 547
PPPPP P P P + P PP G G PPPPP P V
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 546 XGAP 535
AP
Sbjct: 792 YYAP 795
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 972 PXPPXGGXPPPPXXXXPXXXXXPPLPP 892
P P GG PPPP PP PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 971 PPPXXGGXPPPPXXXPXXXXKXPPSP 894
PP G PPPP P PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +2
Query: 578 GXGGGGGXXPPXXGGXGXPXKRGGXXKKKXXKKGXKXGXKXKXGGGGG 721
G GGG G PP GG G GG G G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.44
Identities = 34/144 (23%), Positives = 34/144 (23%), Gaps = 2/144 (1%)
Frame = -2
Query: 1002 PPXFXXGGFXPXPPXG--GXPPPPXXXXPXXXXXPPLPPGXXXXXFFFFXXXXXXXAPGG 829
PP G P PP G PPPP P PP PG
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ---PPPLSSSRAVSNPPAPPPAIPGR 398
Query: 828 XFXGXPXFFFXXGGFPPPXXGXXXXXXXXXXXXF*XPPPPPXFXFXPXLXPFFXNFFXXX 649
P PP P PP P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 648 PPLFXGXPXPPXXGGXXPPPPPXP 577
PPL G P P P PPP P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAP 480
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 967 PPXXGGPPPPXXXXPXXXXKXPPPPXG 887
PP PPPP PPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = -2
Query: 648 PPLFXGXPXPPXXGGXXPPPPPXPXXXVFFXXXXXGAPKKXPPXP 514
PP+ PP PPPPP P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 609 GGXXPPPPPXPXXXVFFXXXXXGAP 535
GG PPPPP P F+ AP
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 893 GGRGGFXXXXGXXXXGGGGXPPXGGXGXKPPXXXXGG 1003
GGRGGF G G GG G G + GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 893 GGRGGFXXXXGXXXXGGGGXPPXGGXGXKPPXXXXGG 1003
GGRGGF G GG G G G GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 627 PXPPXXGGXXPPPPPXP 577
P P G PPPPP P
Sbjct: 347 PTPQVQGSRPPPPPPMP 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.149 0.474
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,983
Number of Sequences: 5004
Number of extensions: 46624
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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