Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M15.2
         (1294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   259   5e-70
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   5.6  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  259 bits (635), Expect = 5e-70
 Identities = 131/207 (63%), Positives = 157/207 (75%), Gaps = 1/207 (0%)
 Frame = +1

Query: 304 TFAFQAELAQLXCLIINTFYSNKXIFLRXLISNSSDALXKIRYXSLTDPSKLDSGKXLYI 483
           TF F+AE++QL  LIINT YSNK IFLR LISN+SDAL KIRY SL+DP  LD+ K L+I
Sbjct: 6   TFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFI 65

Query: 484 KLIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 663
           ++ P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FMEA  +GADISMIGQFGVGF
Sbjct: 66  RITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVGF 125

Query: 664 YSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEF 840
           YS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  ++
Sbjct: 126 YSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQY 185

Query: 841 MXXXXXXXXXXXXSQFIGXPIKLMVEK 921
           +            S+FI  PI+L+V +
Sbjct: 186 LEEKTIKDTVKKHSEFISYPIQLVVTR 212


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 319  AELAQLXCLIINTFYSNKXIFLRXLISNSSDALXKIRYXSLTDPSKLDSGKXLYIKLIPN 498
            AE+  L         +N     R +++N    L KI      DPSK      +Y K+   
Sbjct: 2433 AEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTE 2489

Query: 499  KNEGTLTIIDTGIGMTKADLVNNLG 573
            + +  L   D+GI ++   L+  +G
Sbjct: 2490 ERDFNLEQFDSGIDLSVKFLLEGIG 2514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,552
Number of Sequences: 5004
Number of extensions: 61024
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)