Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M12.2
(1326 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55DDF Cluster: PREDICTED: similar to BRAF35/HDA... 57 9e-07
UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus... 55 4e-06
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot... 42 0.048
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma... 41 0.083
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ... 40 0.11
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re... 37 1.0
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R... 36 2.4
UniRef50_A0V3N7 Cluster: Peptidase S8 and S53, subtilisin, kexin... 35 5.5
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom... 35 5.5
>UniRef50_UPI0000D55DDF Cluster: PREDICTED: similar to BRAF35/HDAC2
complex; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to BRAF35/HDAC2 complex - Tribolium castaneum
Length = 409
Score = 57.2 bits (132), Expect = 9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +1
Query: 631 MEVSNEIKEDIRKTQTDLKNAIRVHQVWVSXLHEDENNVLFKTKVKEXENEIXAIGHAXK 810
+E+S +K++I Q LKNAIR HQ +V L +D +NV + ++ + E EI +G K
Sbjct: 4 LEISKGLKDEIETNQNQLKNAIRNHQSFVIRLKQDPDNVNLQKEINKAEQEIILVGITQK 63
Query: 811 XVVXRXRREXXXYXXXLK 864
++ R R E + LK
Sbjct: 64 SLLERLREEYKAHQKSLK 81
>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
(SV40)
Length = 352
Score = 55.2 bits (127), Expect = 4e-06
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVTSALKA 310
GG N TAPQWM PLLLGLYGSVTSALKA
Sbjct: 284 GGANQRTAPQWMLPLLLGLYGSVTSALKA 312
>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
pneumotropic virus|Rep: Capsid protein VP2 - Murine
polyomavirus (strain Kilham) (MPyV)
Length = 341
Score = 41.5 bits (93), Expect = 0.048
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVTSALK 307
GG N +AP WM PLLLGLYG +T + K
Sbjct: 272 GGANQRSAPDWMLPLLLGLYGDLTPSWK 299
>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
polyomavirus|Rep: Capsid protein VP2 - Bovine
polyomavirus (BPyV)
Length = 353
Score = 40.7 bits (91), Expect = 0.083
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 215 GSGGGXNXXTAPQWMXPLLLGLYGSVTSALKA 310
G+ GG AP W+ PLLLGLYG +T A +A
Sbjct: 270 GAPGGAEQRVAPDWLLPLLLGLYGDLTPAWEA 301
>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
Goose hemorrhagic polyomavirus|Rep: Putative
uncharacterized protein - Goose hemorrhagic polyomavirus
Length = 326
Score = 40.3 bits (90), Expect = 0.11
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVTSALKA 310
GG N AP WM PL+LGLYG+V KA
Sbjct: 257 GGANQRAAPDWMLPLILGLYGTVYPGWKA 285
>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
Putative VP2 - Crow polyomavirus
Length = 333
Score = 37.1 bits (82), Expect = 1.0
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVTSALKA 310
GG + + P WM PL+LGLYG+V KA
Sbjct: 263 GGAHQRSCPDWMLPLILGLYGTVFPGWKA 291
>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
Putative VP2 - Finch polyomavirus
Length = 354
Score = 35.9 bits (79), Expect = 2.4
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVT 295
GG + AP W+ PLLLGLYG +T
Sbjct: 286 GGAHQRHAPDWLLPLLLGLYGDLT 309
>UniRef50_A0V3N7 Cluster: Peptidase S8 and S53, subtilisin, kexin,
sedolisin precursor; n=1; Clostridium cellulolyticum
H10|Rep: Peptidase S8 and S53, subtilisin, kexin,
sedolisin precursor - Clostridium cellulolyticum H10
Length = 632
Score = 34.7 bits (76), Expect = 5.5
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +1
Query: 568 IIKDKAVESYCVLKL*LIVVKMEVSNEIKEDIRKTQTDLKNAIRVHQVWVSXLHEDENNV 747
I KD ++E Y K + K ++S ++KE I+K+ +D + + VH + +E E V
Sbjct: 70 IFKDGSIEEYSKEKHGKLFEKDKLSKKLKEKIKKSSSDEEIPVAVHINDIDH-NEVEKYV 128
Query: 748 LFKTKVKEXENE 783
K K+K+ ++E
Sbjct: 129 KDKLKIKDIKDE 140
>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
polyomavirus|Rep: Capsid protein VP2 - Hamster
polyomavirus (HaPyV)
Length = 345
Score = 34.7 bits (76), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 224 GGXNXXTAPQWMXPLLLGLYGSVT 295
GG + P WM PL+LGLYG ++
Sbjct: 300 GGAHQRVTPDWMLPLILGLYGDIS 323
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,393,633
Number of Sequences: 1657284
Number of extensions: 8077676
Number of successful extensions: 14001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13996
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 136868624542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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