Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M11.2
         (1289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   143   4e-35
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.086
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   1.1  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   7.4  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    27   7.4  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   7.4  
SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    27   7.4  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  143 bits (347), Expect = 4e-35
 Identities = 75/206 (36%), Positives = 113/206 (54%)
 Frame = +3

Query: 381 AIIQRSGVVLSELQXLQXAVXPVLSLMQXXXVMKTIETMRDPKTLINHLSTNKEYEFKIE 560
           A  ++   VL EL  L+  V  +L +++   ++  +   +D    + HL   + Y    E
Sbjct: 84  AFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHLQ--EHYNITPE 139

Query: 561 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGAL 740
            I  +Y+ A+++Y CGNY  ++  LY  +      + N  S  WGK ASEIL  +WDGA+
Sbjct: 140 RIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASEILTVDWDGAM 198

Query: 741 DDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLYL 920
           ++L KLRE +D+     +A     L+ RTWL+HWSLF  FNH  G D + ++F Y P YL
Sbjct: 199 EELGKLREMVDSKSFKDSAVQ---LRNRTWLLHWSLFPLFNHANGCDTLCDLFFYTP-YL 254

Query: 921 NAIQXMCPHIXRYLATXVIINRSRXN 998
           N IQ  CP + RYL   V+ N++  N
Sbjct: 255 NTIQTSCPWLLRYLTVAVVTNQNNAN 280


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -1

Query: 680 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 501
           Q++ V W+HHQ       C   I + F  IFGQ I AID ++ KL  +  +    +SF  
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384

Query: 500 P 498
           P
Sbjct: 385 P 385


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 483 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 614
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 797 GSGTGSTVIDELSKFG*IIERAIP 726
           GSGTGSTV   L+ F   + R +P
Sbjct: 272 GSGTGSTVFQVLNAFSKAVGRDLP 295


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 735 RHPNFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 625
           R   FVP    P  P K P      L  +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +3

Query: 717 VQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEM 896
           V  +D AL    K+RE+  N G  +  S ++ ++   W+ ++S  + F       +   M
Sbjct: 125 VGQFDSALRSYAKVREYCTNAGQIAHLS-LELMRISIWIGNYSHVLAFGSRAKSTVSAAM 183

Query: 897 FLYKPLY 917
            L  P+Y
Sbjct: 184 ELTSPIY 190


>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
           Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 699 LASEILVQNWDGALDDLTKLREFID 773
           LA++I  QN  G LD+L+ LR+F D
Sbjct: 111 LANKIDDQNLQGILDELSTLRKFQD 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,723
Number of Sequences: 5004
Number of extensions: 70213
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)