Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M11.2
         (1289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679...   198   1e-50
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362...   167   2e-41
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012...   109   6e-24

>07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,
            6796790-6796932,6797388-6797607,6798087-6798208,
            6798317-6798544,6798993-6799355
          Length = 451

 Score =  198 bits (482), Expect = 1e-50
 Identities = 98/240 (40%), Positives = 158/240 (65%)
 Frame = +3

Query: 315  THMLAXVTDIXSMLXPEAATPEAIIQRSGVVLSELQXLQXAVXPVLSLMQXXXVMKTIET 494
            T+M+    DI   L      P+ +++R   V+S L+ L  A  P++S +Q     + ++ 
Sbjct: 48   TNMVDYAMDIHKSLHDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQN---QQLVQE 104

Query: 495  MRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKN 674
            +R  K    H+  ++ ++   E I+++Y+ AK++++CGNY ++A YLY  + + + ++++
Sbjct: 105  LRPDKQYNLHMLQDR-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS 163

Query: 675  YLSVLWGKLASEILVQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFV 854
             LS LWGKLA+EIL+QNWD ALD+L +L+E ID+    + +S +  LQ R WL+HWS+F+
Sbjct: 164  -LSALWGKLAAEILMQNWDVALDELNRLKEIIDSK---NFSSPLNQLQNRIWLMHWSIFI 219

Query: 855  FFNHVKGRDLIIEMFLYKPLYLNAIQXMCPHIXRYLATXVIINRSRXNALKDXVKVIQQE 1034
            FFNH  GR+ II++F ++  YLNAIQ   PH+ RYLAT V++N+ R N LK+ +KVIQQE
Sbjct: 220  FFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQE 278


>07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,
            3629747-3629966,3630434-3630576,3631004-3631141,
            3631275-3631380
          Length = 415

 Score =  167 bits (406), Expect = 2e-41
 Identities = 76/159 (47%), Positives = 118/159 (74%)
 Frame = +3

Query: 558  EMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGA 737
            + I+++Y+ AK++++CGNY  +A YL+  + + +  +++ LS LWGKLA+EIL+QNWD A
Sbjct: 101  DQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEILMQNWDVA 159

Query: 738  LDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPLY 917
            L++L +L+E ID+    + +S +  LQ R WL+HWS+F+F+NH  GR+ II++F ++  Y
Sbjct: 160  LEELNRLKEIIDSK---NFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLF-FQERY 215

Query: 918  LNAIQXMCPHIXRYLATXVIINRSRXNALKDXVKVIQQE 1034
            LNAIQ   PH+ RYLAT V++N+ R N LK+ +KVIQQE
Sbjct: 216  LNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQE 254


>07_03_0517 + 19000050-19000427,19000539-19000766,19001142-19001221,
            19001222-19001441,19001571-19001713,19002023-19002160,
            19002295-19002376
          Length = 422

 Score =  109 bits (261), Expect = 6e-24
 Identities = 70/220 (31%), Positives = 120/220 (54%)
 Frame = +3

Query: 375  PEAIIQRSGVVLSELQXLQXAVXPVLSLMQXXXVMKTIETMRDPKTLINHLSTNKEYEFK 554
            P+ +++R   V++ L  L     P++S ++   +         P    N    ++ ++  
Sbjct: 77   PDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPDKEHNIRMLHERFQIG 128

Query: 555  IEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDG 734
             + I+++Y+ AK++++CGNY ++A  L+  + + + ++++ LS  WGKL++EIL  NWD 
Sbjct: 129  PDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQWGKLSAEILNNNWDV 187

Query: 735  ALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEMFLYKPL 914
            AL++L  L+E ID+        N Q L Q    +++S+  F   +  R            
Sbjct: 188  ALEELNCLKEMIDSKQCFVCHINYQILSQ----LNFSICAF--RLPSR------------ 229

Query: 915  YLNAIQXMCPHIXRYLATXVIINRSRXNALKDXVKVIQQE 1034
            YLNAIQ   PH+ RYLA  +++NR R N LK+ VKVIQQE
Sbjct: 230  YLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQE 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,691,067
Number of Sequences: 37544
Number of extensions: 470974
Number of successful extensions: 1037
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4015679940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)