Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M10.2
         (1294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.26 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    30   0.60 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    28   2.4  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   5.6  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    27   5.6  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   7.5  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 61  FFFFFXFSFFXXFFFXXFF--FXLNFXXFXFYFFFFXXFFF 177
           FFFFF FS    F    F   +  N   F  +FF+F  F F
Sbjct: 79  FFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSF 119



 Score = 26.6 bits (56), Expect(2) = 0.28
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 61  FFFFFXFSFFXXFFFXXFFFXLNFXXFXFYFFF 159
           FFF   FS F   FF  FF    F    + F F
Sbjct: 5   FFFASLFSSFESLFFRLFFVCSFFFPLLYSFIF 37



 Score = 23.4 bits (48), Expect(2) = 0.28
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 145 FYFFFFXXFFF 177
           FY+FFF  FFF
Sbjct: 75  FYWFFFFFFFF 85


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 146 KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           K + ++ K  K  KK+K  KKEK +KKKK
Sbjct: 444 KEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 161 KKKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           +K   K   K+ K KK  KK+K  KK+K KKK K
Sbjct: 131 RKTSGKESSKREKSKK--KKEKKEKKDKLKKKSK 162



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 158 KKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           KKK + K KK K KK  K+ K       K+K+K
Sbjct: 145 KKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRK 177



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 161 KKKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           KK K +    K   K+   KKK  KKEK  K KK
Sbjct: 126 KKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 161 KKKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           K K  K   K+   ++  KKKK  K++K K KKK
Sbjct: 127 KVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKK 160


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 161 KKKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKK 63
           KKK  K K    +  K  KK+K  KK K  K+K
Sbjct: 455 KKKSSKLKEADGESSKKEKKEKKDKKHKKSKRK 487


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 158 KKK*KXKXKKFKXKKXXKKKKXXKKEKXKKKKK 60
           KKK K   KK K     K+K     ++ KKKKK
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKK 229


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 119 KKXXKKKKXXKKEKXKKKK 63
           KK  K KK  KKEK KKK+
Sbjct: 460 KKEKKDKKEKKKEKSKKKR 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,932
Number of Sequences: 5004
Number of extensions: 3664
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)