Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M09.2
         (1319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           50   5e-08

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 50.0 bits (114), Expect = 5e-08
 Identities = 24/29 (82%), Positives = 24/29 (82%)
 Frame = +2

Query: 293 AVTYTAHAKRXTVTAMDVVYALKRQGXTL 379
           AVTYT H KR TVTAMDVVYALK QG TL
Sbjct: 70  AVTYTEHTKRKTVTAMDVVYALKIQGRTL 98



 Score = 30.3 bits (65), Expect = 0.039
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +3

Query: 180 PAIRXXARRGGVXRXSGL 233
           PAIR  ARRGGV R SGL
Sbjct: 33  PAIRRLARRGGVKRISGL 50



 Score = 26.6 bits (56), Expect = 0.48
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 247 TRSVLKVFLEHVIR 288
           TR VLKVFLE+VIR
Sbjct: 55  TRGVLKVFLENVIR 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,728
Number of Sequences: 438
Number of extensions: 975
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45503877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)