Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M08.2
         (1396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   2.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   3.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 1302 GGGGGGGXXXXAPPXXP 1252
            GGGGG G     PP  P
Sbjct: 524  GGGGGSGSGNNQPPGGP 540



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 1306 GGGGGGGGGXXXXP 1265
            GGGGG G G    P
Sbjct: 524  GGGGGSGSGNNQPP 537


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1281 PPPPPPP 1301
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 1283 PPPPPPP 1303
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 1286 PPPPPPP 1306
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 1289 PPPPPPXR 1312
            PPPPPP R
Sbjct: 731  PPPPPPPR 738


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,079
Number of Sequences: 336
Number of extensions: 832
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41618205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)