Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M07.2
         (1338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   198   1e-51
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   1.5  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    28   3.4  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
            Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  198 bits (483), Expect = 1e-51
 Identities = 112/266 (42%), Positives = 148/266 (55%), Gaps = 2/266 (0%)
 Frame = +3

Query: 246  LYPXAVLXAALKHXXVQLRLNSIKQLSTXALALGVEXXKSELIPFLTETIYDXXXXXXXX 425
            LYP AVL   LKH  +  RLN++++LST ALALG E  + ELIPFL E+I D        
Sbjct: 10   LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69

Query: 426  XXXXGSFINLVGGGXFAHCXXXXXXXXXXXXXTVVRDKAVASLRAVAEHHSPQALEEHFV 605
                G+F++ VGG  +AH              TVVRDKAV SL  V    S + LE++FV
Sbjct: 70   ADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFV 129

Query: 606  PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAP-VKAELRQHFRSLCQDDTPMVRRAAAYK 782
            PLVQRL+  +WFTSR S+ GL+   Y +   P VK  LRQ F  LC D+ PMVRR AA  
Sbjct: 130  PLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATN 189

Query: 783  LGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVR-XXXXXXXXXXXXXXTPEDMEQHVMPT 959
              +F  +V  +    + IP+F  L+ DDQDSVR               +  ++  +++  
Sbjct: 190  CAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQP 249

Query: 960  VRALSGDASXRVRYMVADKFVKLXKL 1037
            +R+   D+S R RYMVA  FVKL K+
Sbjct: 250  LRSFVSDSSWRTRYMVAANFVKLAKV 275



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
 Frame = +3

Query: 582 QALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYP--RVSAPVKAELRQHFRSLCQDDTP 755
           +A++E F+PL   L+  D  + R  +  +        +  + ++  L Q  RS   D + 
Sbjct: 201 EAIDE-FIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSW 259

Query: 756 MVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPED 935
             R   A    + AKVV    +K +LI  FV+L +D +  VR                  
Sbjct: 260 RTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRI 319

Query: 936 MEQHVMPTVRALSGDASXRVR 998
           + + ++P ++ L  D +  VR
Sbjct: 320 VLEEIIPVIQELINDPAQHVR 340



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +3

Query: 594 EHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAE-LRQHFRSLCQDDTPMVRRA 770
           E  +P++Q L        R +         P++      E L   F  L +D+ P VR  
Sbjct: 322 EEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLN 381

Query: 771 AAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVR 881
              KL    KVV IE +   L+P  V LAED Q  VR
Sbjct: 382 IISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVR 418



 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 32/144 (22%), Positives = 56/144 (38%)
 Frame = +3

Query: 606  PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVRRAAAYKL 785
            PL   ++   W T    A     +      + +K EL + F  L +D    VRRA A ++
Sbjct: 249  PLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQI 308

Query: 786  GEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDMEQHVMPTVR 965
              F ++++   V  ++IP+   L  D    VR                E   ++++P   
Sbjct: 309  PGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFL 368

Query: 966  ALSGDASXRVRYMVADKFVKLXKL 1037
             L  D +  VR  +  K   + K+
Sbjct: 369  ELLKDENPEVRLNIISKLEVVNKV 392


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
 Frame = -3

Query: 865 SSSAKITNMGIRSLLTYSISTTFANSPSL*AAARRTIGVSS*QRERKC*RSSAFTGAETR 686
           SSS   T     S    S STT   SPS  +++  +   SS         SS+ + + + 
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188

Query: 685 G*HTLNSPQADVLEVNQSP-PARRCTSGTKCSSSACGLWCSATAR-----SEATALSRTT 524
              + +S  +     + S  P    TS +  SSS+     S+++R     S  T +S +T
Sbjct: 189 SSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSST 248

Query: 523 VXST-AANXSRGGRRQCANXPPPTKLMKLPSCSASAKRTXXSS*IVSV 383
             ST     S       +  P  T  + L +  AS   +  +  IV +
Sbjct: 249 FISTVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGI 296


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 983 SVSGQCAYSWHHMLLHILRSQ*SCNRRAGLGSQQTNGILIILCQNHKYGNKIALNIFNLH 804
           +VSG  A+ W+  +  I ++    NR A L   QT G  +++     +   + L  F  +
Sbjct: 216 NVSGTVAHEWYMGIAAITQNYKQANRIASLKWVQTFGTSLLIALTDTFSTDVFLKSFTAN 275

Query: 803 N 801
           +
Sbjct: 276 S 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,665
Number of Sequences: 5004
Number of extensions: 62871
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)