Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M07.2
(1338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 217 2e-56
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 35 0.17
01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356 33 0.51
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 32 0.89
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 2.1
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 30 4.8
01_05_0598 + 23548081-23548186,23548277-23549508,23549621-235496... 29 6.3
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 29 8.3
>09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 217 bits (529), Expect = 2e-56
Identities = 117/261 (44%), Positives = 149/261 (57%)
Frame = +3
Query: 246 LYPXAVLXAALKHXXVQLRLNSIKQLSTXALALGVEXXKSELIPFLTETIYDXXXXXXXX 425
LYP A+L LK+ +QLRLNSI++LST A ALG E + ELIPFL+E D
Sbjct: 8 LYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDEDEVLLAM 67
Query: 426 XXXXGSFINLVGGGXFAHCXXXXXXXXXXXXXTVVRDKAVASLRAVAEHHSPQALEEHFV 605
G FI VGG AH T VRDKAV SL + + + FV
Sbjct: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKESDIVDWFV 127
Query: 606 PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVRRAAAYKL 785
P+V+RLA G+WFT+R S+CGLF + YP +KAELR + LCQDD PMVRRAAA L
Sbjct: 128 PVVKRLAAGEWFTARVSSCGLFHIAYPSAPDQLKAELRTIYGQLCQDDMPMVRRAAASNL 187
Query: 786 GEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDMEQHVMPTVR 965
G+FA VE Y+K++++ IF L +DDQDSVR P+D H++P +
Sbjct: 188 GKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
Query: 966 ALSGDASXRVRYMVADKFVKL 1028
S D S RVRYMVA++ +L
Sbjct: 248 NFSQDKSWRVRYMVANQLYEL 268
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/90 (31%), Positives = 44/90 (48%)
Frame = +3
Query: 741 QDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXX 920
QD + VR A +L E + V E+ + L+P +V L D++ VR
Sbjct: 251 QDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310
Query: 921 XTPEDMEQHVMPTVRALSGDASXRVRYMVA 1010
+P+ QH++P V+ LS D+S VR +A
Sbjct: 311 LSPQLAIQHILPCVKELSSDSSQHVRSALA 340
Score = 46.0 bits (104), Expect = 7e-05
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 2/209 (0%)
Frame = +3
Query: 261 VLXAALKHXXVQLRLNSIKQLSTXALALGVEXXKSELIPFLTETIYDXXXXXXXXXXXXG 440
+ + LK +RLN I +L +G++ L+P + E D
Sbjct: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
Query: 441 SFI-NLVGGGXFAHCXXXXXXXXXXXXXTVVRDKAVASLRAVAEHHSPQALEEHFVPLVQ 617
+ + +G G F +RD A +L+ +AE P+ +H +P V
Sbjct: 422 PLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWAMQHIIPQVL 481
Query: 618 RLAGGDWFTSRTSACGLFSVCYPRVSAPVKA-ELRQHFRSLCQDDTPMVRRAAAYKLGEF 794
+ R + S+ P + A + +L + +D P ++ A L
Sbjct: 482 EKINNPHYLYRMTILQAISLLAPVMGAEITCQQLLPVVINSSKDRVPNIKFNVAKVLQAL 541
Query: 795 AKVVEIEYVKSDLIPIFVILAEDDQDSVR 881
+++ V+ ++ P V L+ED VR
Sbjct: 542 IPILDQSVVEKNVKPCLVELSEDPDVDVR 570
Score = 43.2 bits (97), Expect = 5e-04
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 528 VRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVK 707
VR A + SPQ +H +P V+ L+ R++ + P +
Sbjct: 296 VRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEAT 355
Query: 708 AE-LRQHFRSLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVR 881
E L F SL +D+ P VR KL + +V+ I+ + L+P V LAED VR
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 414
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = -1
Query: 954 ASHAAPYPQESIELQPPRRPRQPTDERNLDHPLPKSQIWE*DRS*HIQSPQLSQTLQVCR 775
+S A P P ES Q +P+QPT+E + P P + E D I P+L+ LQ
Sbjct: 309 SSSAPPTPDESHTQQAQPQPQQPTEESSNTEPKPLLFVAEQD---GIPEPELNPQLQTAE 365
Query: 774 Q 772
Q
Sbjct: 366 Q 366
>01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356
Length = 354
Score = 33.1 bits (72), Expect = 0.51
Identities = 25/87 (28%), Positives = 35/87 (40%)
Frame = -3
Query: 676 TLNSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVXSTAANXS 497
T NS + L ++PP ++ G WCS R A + V S + S
Sbjct: 5 TPNSGGSSCLPARRTPPPLAAAGEAGSLAAGPGRWCSWRRRQPAERWPKLAV-SASGRKS 63
Query: 496 RGGRRQCANXPPPTKLMKLPSCSASAK 416
+GGR + P K K S S+S K
Sbjct: 64 KGGRDEGGGDEP--KKNKAASSSSSGK 88
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 32.3 bits (70), Expect = 0.89
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 1029 AALRTYQQPYIGLSXKRLRTVRVQLA---SHAAPYPQESIELQPPRRPRQ 889
+ + TYQ P++ +R +T++ ++ S +AP P S+ L PP P Q
Sbjct: 665 SVIHTYQTPFMVDMLQRSQTLQPEVVVAMSRSAPLPAPSLSLSPPPPPSQ 714
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.1 bits (67), Expect = 2.1
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 741 QDDTPMVRRAAAYKLGEFAKVVEIEYVK--SDLIPIFVILAEDDQDSVR 881
+D MVR AA++ LG+FA+ ++ E + ++P + ED D V+
Sbjct: 389 KDQEQMVRGAASFALGQFAEHLQPEILSHYESVLPCILNALEDPSDEVK 437
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 542 SGFTPCRCRAPQPASTRGTLCATSTAPCWRRLVHFKNIR 658
SGF CR + LCA+ST +R+ VH+K ++
Sbjct: 524 SGFQQCRFTVGRVNLDVDYLCASSTYLLYRQFVHYKELK 562
>01_05_0598 +
23548081-23548186,23548277-23549508,23549621-23549652,
23549796-23550039
Length = 537
Score = 29.5 bits (63), Expect = 6.3
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 954 ASHAAPYPQESIELQPPRRPRQPTDERNLD 865
AS AAP Q S L PP +P+Q TD R+L+
Sbjct: 66 ASAAAPTCQPS--LHPPDQPQQETDHRSLE 93
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 625 ARRCTSGTKCSSSACGLWCSATARSEATALSRTTVXSTAANXSRGG 488
A+RC G +SAC S++A + A A T STAA+ + G
Sbjct: 104 AKRC--GVTTDASACAKSASSSATAAAAAAGAGTAGSTAASSASTG 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,124,025
Number of Sequences: 37544
Number of extensions: 494374
Number of successful extensions: 1605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4201914372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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