Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M05.2
         (1300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.15 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316 GFXFXFXGXGGGGXG-FXGXXXXXXPGGXGVGXWGXXXXXXXKXXGPXXWGGGXG 477
           G  F   G  GGG G F G      PG  G G +G          G   +GGG G
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +1

Query: 337 GXGGGGXGFXGXXXXXXPGGXGVGXWGXXXXXXXKXXGPXXWGGGXG 477
           G GGG  GF G      PGG G G  G          GP  +GGG G
Sbjct: 225 GFGGGPGGFEGG-----PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = -2

Query: 786 PPFXXGXXGAXFXFTAXXXPXXXXGGFXGGXPGFFXXPXGF--SPXFXGVHFFDXXXGGG 613
           PP   G  G    F          GGF GG  GF   P GF   P   G        G G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 612 AFWKXP 595
            F   P
Sbjct: 260 GFGGGP 265


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 419 GPXKPTPXPPGXXXXFXPXKPXPPPPXPXKXKXN 318
           G   P P PPG      P  P PPPP   K + N
Sbjct: 7   GNPPPPPPPPGFEPPSQP--PPPPPPGYVKKRKN 38



 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 525 PPXFXEXPFPPXGGGXPXXPPPXP 454
           PP     P PP G   P  PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -3

Query: 497 PPXXGGXPXPPPQXXGPXXFXGGXGXGPXKPTPXPPGXXXXFXPXKPXPPP 345
           PP     P P P    P         GP  P P PPG      P  P PPP
Sbjct: 735 PPPAVIVPTPAPAPI-PVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
 Frame = -3

Query: 476 PXPPPQXXGPXXFXGGXGXGPXKPT---PXPPGXXXXFXPXKPXPPPPXP 336
           P PPP    P          P  P    P PP          P PPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.148    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,592
Number of Sequences: 5004
Number of extensions: 26553
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)