Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M04.2
         (1487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    80   7e-16
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             29   2.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   5.0  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
            subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
 Frame = +1

Query: 829  KNPIKVITVRGTAFPAEPLEGGSAA-----IDKAPEGEL*ELIWLNF*SRN*PNLTDQNS 993
            K+PIK++TVR +AF A P  G  AA     ID  P   L E +  N      P+L+    
Sbjct: 169  KDPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAA-LQEWVSENIIKNARPDLSSAE- 226

Query: 994  LVLRNIVSGGRGLKSGDNF-KLLYDLADKLNAXVGASRAAVDAGFVPNDLKIGQXGKMVA 1170
                 +V+GGR LK  + F ++L  LADKL A +GA+R AVD+G+  N L+IGQ GK++A
Sbjct: 227  ----RVVAGGRPLKDKETFERILTPLADKLGAAIGATRVAVDSGYADNSLQIGQTGKIIA 282


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 1259 DFFXXTMFLNFSXRPIXNSTXXAYXDXQXRATILPXCPI 1143
            DF   T+F N     I + T   Y D Q +  + P  P+
Sbjct: 148  DFTVNTLFFNIRTEKIEDITKRGYKDLQTKVLVTPISPL 186


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 920 SGALSIAADPPSNGSAGNAVPRTVMTLIGFFGLKG*YSVTS 798
           SGA + AA  P+N +AGN+    V  L+   G  G   +TS
Sbjct: 555 SGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTS 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,541
Number of Sequences: 5004
Number of extensions: 46812
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)