Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_M04.2
(1487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 87 4e-17
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 30 4.1
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 29 7.1
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 29 9.4
03_05_0051 - 20288456-20291728 29 9.4
>03_06_0581 + 34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 86.6 bits (205), Expect = 4e-17
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 7/116 (6%)
Frame = +1
Query: 844 VITVRGTAF-PAEPLEGGSAA----IDKA--PEGEL*ELIWLNF*SRN*PNLTDQNSLVL 1002
++++R T+F P E + A +D + EG + W+N S++ N+ V
Sbjct: 183 MMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAPV- 241
Query: 1003 RNIVSGGRGLKSGDNFKLLYDLADKLNAXVGASRAAVDAGFVPNDLKIGQXGKMVA 1170
+V+GGRGLKS +NFK+L LA+KL A VGA+RAAVDAGFVPN+L++GQ GK+VA
Sbjct: 242 --VVTGGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQVGQTGKIVA 295
>02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 30.3 bits (65), Expect = 4.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 1151 CPIFRSLGTKPASTAAREAPTXAFNLSARS 1062
C RS+GT +S +AR T A +LSARS
Sbjct: 169 CSSMRSVGTTASSLSARSVGTTASSLSARS 198
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 29.5 bits (63), Expect = 7.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFFXK 1434
FFFFFFFFF FF +
Sbjct: 72 FFFFFFFFFFFFFFFDR 88
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 62 FFFFFFFFFFFFFFF 76
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 63 FFFFFFFFFFFFFFF 77
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 64 FFFFFFFFFFFFFFF 78
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 65 FFFFFFFFFFFFFFF 79
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 66 FFFFFFFFFFFFFFF 80
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 67 FFFFFFFFFFFFFFF 81
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 68 FFFFFFFFFFFFFFF 82
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 69 FFFFFFFFFFFFFFF 83
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 70 FFFFFFFFFFFFFFF 84
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 71 FFFFFFFFFFFFFFF 85
>05_03_0496 + 14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 87 FFFFFFFFFFFFFFF 101
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 88 FFFFFFFFFFFFFFF 102
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 89 FFFFFFFFFFFFFFF 103
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 90 FFFFFFFFFFFFFFF 104
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 91 FFFFFFFFFFFFFFF 105
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 92 FFFFFFFFFFFFFFF 106
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 93 FFFFFFFFFFFFFFF 107
Score = 29.1 bits (62), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 1484 FFFFFFFFFXXXXFF 1440
FFFFFFFFF FF
Sbjct: 94 FFFFFFFFFFFFFFF 108
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 975 IWSIPALKIQPDQFL*FALRCF-INCCRPSLQ-RLCREC 865
+W+ P L++ PD+ L +LR + C P L+ RL +EC
Sbjct: 1031 LWNCPELELLPDEQLPLSLRKLEVALCNPVLKDRLRKEC 1069
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,975
Number of Sequences: 37544
Number of extensions: 326685
Number of successful extensions: 1110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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