Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M03.2
         (1377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 1215 PPXPRGXPAXXXXPXXTPXPPP 1150
            PP P G PA    P   P PPP
Sbjct: 457  PPLPAGMPAAPPLPPAAPAPPP 478


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 960 PPXPPPXXXXXPPPPXDFW 904
           PP PPP     PPP  DFW
Sbjct: 306 PPPPPP-----PPPSNDFW 319


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 1212 PXPRGXPAXXXXPXXTPXPPPPGXXNK 1132
            P P   P     P   P PPPPG   K
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPPGYVKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.149    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,932
Number of Sequences: 5004
Number of extensions: 21087
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 761089174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)