Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M02.2
         (1237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    30   0.76 
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   5.4  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    27   7.1  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 814 KSLKKYTINFIKKKFTHNLFCNLYRNSNNNYL 719
           + L+  + + ++  FTH LFC ++ + N +YL
Sbjct: 87  EELQTTSYDLVRNPFTHGLFCVVFYHQNKSYL 118


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 392 AGSPCRTPSTPVMKKKQLLGRSPTKLYSPFGIETPQGREF 511
           AGS   TP+   +  K+  GR P   Y+ +G       E+
Sbjct: 5   AGSDASTPTNHTVSSKKRRGRPPKGSYAAYGSSDDDDEEY 44


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 876 HSSVPVFKLKPCTVXINWRLITGV*RNVPXHHRY 977
           H    + KL+P TV + W+ +    R +   HRY
Sbjct: 83  HRLTAIDKLRPLTVLVAWKQLNIAMRPIFPQHRY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,833
Number of Sequences: 5004
Number of extensions: 81590
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)