Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_M01.2
         (1316 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus...    50   1e-04
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot...    38   0.44 
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma...    38   0.58 
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ...    37   1.3  
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re...    36   3.1  
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R...    35   5.4  

>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
           Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
           (SV40)
          Length = 352

 Score = 50.4 bits (115), Expect = 1e-04
 Identities = 23/29 (79%), Positives = 24/29 (82%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVTSALKA 306
           GGA  +TAPQWMLP LLGL G VTSALKA
Sbjct: 284 GGANQRTAPQWMLPLLLGLYGSVTSALKA 312


>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
           pneumotropic virus|Rep: Capsid protein VP2 - Murine
           polyomavirus (strain Kilham) (MPyV)
          Length = 341

 Score = 38.3 bits (85), Expect = 0.44
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVTSALK 303
           GGA  ++AP WMLP LLGL G +T + K
Sbjct: 272 GGANQRSAPDWMLPLLLGLYGDLTPSWK 299


>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
           polyomavirus|Rep: Capsid protein VP2 - Bovine
           polyomavirus (BPyV)
          Length = 353

 Score = 37.9 bits (84), Expect = 0.58
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVTSALKA 306
           GGA  + AP W+LP LLGL G +T A +A
Sbjct: 273 GGAEQRVAPDWLLPLLLGLYGDLTPAWEA 301


>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
           Goose hemorrhagic polyomavirus|Rep: Putative
           uncharacterized protein - Goose hemorrhagic polyomavirus
          Length = 326

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVTSALKA 306
           GGA  + AP WMLP +LGL G V    KA
Sbjct: 257 GGANQRAAPDWMLPLILGLYGTVYPGWKA 285


>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
           Putative VP2 - Crow polyomavirus
          Length = 333

 Score = 35.5 bits (78), Expect = 3.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVTSALKA 306
           GGA  ++ P WMLP +LGL G V    KA
Sbjct: 263 GGAHQRSCPDWMLPLILGLYGTVFPGWKA 291


>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
           Putative VP2 - Finch polyomavirus
          Length = 354

 Score = 34.7 bits (76), Expect = 5.4
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 220 GGAXXKTAPQWMLPXLLGLXGXVT 291
           GGA  + AP W+LP LLGL G +T
Sbjct: 286 GGAHQRHAPDWLLPLLLGLYGDLT 309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,850,491
Number of Sequences: 1657284
Number of extensions: 1571889
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 135653814265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)