Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L23.2
         (1238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   4.1  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   5.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   5.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   9.4  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 573 TSGQHTVHTSISQQVTLNMLNAPEPEMEVENLGGDVKLEFEPSTE 707
           +S    + T IS+  T+N  +AP+ +    N   + K+  E S +
Sbjct: 82  SSDNAAIDTDISEDETINQRHAPQTDYRYPNTSANPKMGLEESMD 126


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 691 NSNLTSPPRFSTSISGSGAFS----ILRVTCCEID 599
           +S+L  PP F TSI+ +G+ S     L VT C +D
Sbjct: 231 DSSLCQPPNFVTSINKAGSSSDHGGELHVTYCPVD 265


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 776 YIGINDIITFTKLLKFAPLSNNFLCAWLKL 687
           Y+G  ++ +FTK   F   +N+F   W K+
Sbjct: 579 YLGAGEVTSFTKSSTFTSATNSFDLIWKKV 608


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 645 PEMEVENLGGDVKLEFEPSTEEI 713
           PE   +N GG+  LE  PST E+
Sbjct: 475 PESSEQNRGGNKHLELYPSTAEV 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,167
Number of Sequences: 5004
Number of extensions: 64168
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)