Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L22.2
         (1429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   6.4  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   8.4  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 160 FFXXFXFXXFFFFFFFFXXFXFXF 89
           FF    +  FFF FFF   F F F
Sbjct: 62  FFIKMRYLSFFFEFFFLFSFAFAF 85


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 111 KKKKKKKKXXXKKXKKK 161
           KKKKKKKK   KK K K
Sbjct: 436 KKKKKKKKNNKKKKKNK 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,304
Number of Sequences: 5004
Number of extensions: 5993
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 794871200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)