Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L22.2
         (1429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical ...    30   4.6  
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    30   4.6  

>AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical
           protein Y15E3A.3 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 71  KKXXXKKXKXKXXKKKKKKKKXXKXKXXKKXXXK 172
           KK   KK K +  KKKKKK K  K K   K   K
Sbjct: 97  KKTTKKKGKLQALKKKKKKTKSSKIKVEPKKKEK 130


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 65  KXKKXXXKKXKXKXXKKKKKKKKXXKXKXXKK 160
           K +K   K+ K K  KKK KKK+  K K  KK
Sbjct: 201 KEEKKEKKEDKKKDEKKKDKKKEDKKDKKDKK 232



 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 64  KKXKXXXKKXKKXXXXKKKKK-KKKXXXKXXKKKXXKK 174
           K+ K   KK +K    K+KK+ KKK   K  KKK  KK
Sbjct: 189 KEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKK 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,363,217
Number of Sequences: 27780
Number of extensions: 49139
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4069011098
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)