Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L20.2
(1326 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VEC1 Cluster: Mediator of RNA polymerase II transcrip... 189 2e-46
UniRef50_A7SW38 Cluster: Predicted protein; n=1; Nematostella ve... 146 9e-34
UniRef50_Q9NVC6 Cluster: Mediator of RNA polymerase II transcrip... 128 3e-28
UniRef50_UPI00015A5977 Cluster: CRSP complex subunit 6 (Cofactor... 126 1e-27
UniRef50_UPI0000E49395 Cluster: PREDICTED: hypothetical protein;... 123 1e-26
UniRef50_Q2QLK7 Cluster: Expressed protein; n=3; Oryza sativa|Re... 41 0.083
UniRef50_Q9NAL4 Cluster: Mediator of RNA polymerase II transcrip... 40 0.11
>UniRef50_Q9VEC1 Cluster: Mediator of RNA polymerase II
transcription subunit 17; n=7; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 17 -
Drosophila melanogaster (Fruit fly)
Length = 642
Score = 189 bits (460), Expect = 2e-46
Identities = 90/154 (58%), Positives = 111/154 (72%)
Frame = +3
Query: 510 ESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPVQ 689
E S+ +DE +Q SLWPW +VRNKL+ ALTE+ VL+DV++IAK+KRY+VLDP+
Sbjct: 59 EKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLSDVISIAKDKRYLVLDPLL 118
Query: 690 PEKVESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMPDFHIDLLRLRQNWR 869
E +++P+VQVY RKK G ERLR + + RN+ DFHI+LLRLRQNWR
Sbjct: 119 EEADDTKPIVQVYSRKKAISQAAQVLLSGAERLRNAHSEQRNRNVSDFHIELLRLRQNWR 178
Query: 870 LKKVSNTIIGDLSYRTAGSKFSQTGVFEVTKAPE 971
LKKVSN IIGDLSYRTAGSKF +G FEVTKA E
Sbjct: 179 LKKVSNAIIGDLSYRTAGSKFGMSGTFEVTKAEE 212
>UniRef50_A7SW38 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 645
Score = 146 bits (355), Expect = 9e-34
Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 7/161 (4%)
Frame = +3
Query: 501 QAGESSSDTKSDEXNKDQ-SYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVL 677
+A +++ D + NK ++Q SLWPW SVR KLR+ALTEV VL+D+LN+ KEK+Y+VL
Sbjct: 56 KADDNADDNDDESDNKTLVTFQPSLWPWDSVRTKLRNALTEVCVLSDLLNVVKEKKYVVL 115
Query: 678 DPVQPEKVESRPMVQVYGRKKXXXXXXXXXXXGMERL------RASEXMRMARNMPDFHI 839
DPV + S+P +Q+ +KK G +R+ R S+ R + DFH
Sbjct: 116 DPVSQSQAISKPTLQLLAKKKNLRDAATILLQGSKRMESAVQERMSQQSRPDQERSDFHS 175
Query: 840 DLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
+L+ LRQ WRLK+ N+++GDL+YR+AGS+F G+FEVTK
Sbjct: 176 ELINLRQRWRLKRTGNSLMGDLTYRSAGSQFWNPGLFEVTK 216
>UniRef50_Q9NVC6 Cluster: Mediator of RNA polymerase II
transcription subunit 17; n=29; Euteleostomi|Rep:
Mediator of RNA polymerase II transcription subunit 17 -
Homo sapiens (Human)
Length = 651
Score = 128 bits (309), Expect = 3e-28
Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Frame = +3
Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
G SS + DE + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72 GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130
Query: 687 QPEKV---ESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-DFHIDLLRL 854
+ + ++ +Q+ +KK G ERL S + DF+ +LLRL
Sbjct: 131 SQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRL 190
Query: 855 RQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
RQ+W+L+KV + I+GDLSYR+AGS F G FEV K
Sbjct: 191 RQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIK 226
>UniRef50_UPI00015A5977 Cluster: CRSP complex subunit 6 (Cofactor
required for Sp1 transcriptional activation subunit 6)
(Transcriptional coactivator CRSP77) (Vitamin D3
receptor-interacting protein complex 80 kDa component)
(DRIP80) (Thyroid hormone receptor-associated protein
complex 8; n=1; Danio rerio|Rep: CRSP complex subunit 6
(Cofactor required for Sp1 transcriptional activation
subunit 6) (Transcriptional coactivator CRSP77) (Vitamin
D3 receptor-interacting protein complex 80 kDa
component) (DRIP80) (Thyroid hormone receptor-associated
protein complex 8 - Danio rerio
Length = 609
Score = 126 bits (304), Expect = 1e-27
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Frame = +3
Query: 501 QAGESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLD 680
+AG + +E +Q SLWPW SVRN LRSALTE+ VL DVL++ KE++YM LD
Sbjct: 65 RAGREQWKQEPEEDEGQLKFQPSLWPWDSVRNNLRSALTEMCVLHDVLSVLKERKYMTLD 124
Query: 681 PV--QPEKVESRPMVQVYGRKKXXXXXXXXXXXGMERLRAS-EXMRMARNMPDFHIDLLR 851
PV P ++ + Q+ +KK G E+L S + R DF+ +LLR
Sbjct: 125 PVSQDPAMAKTPQVFQLISKKKSLGTAAQLLLKGAEKLSKSVSENQEQRRQRDFNSELLR 184
Query: 852 LRQNWRLKKVSNTIIGDLSYRTAG-SKFSQTGVFEVTK 962
LR W+L+KV + I+GDLSYR+AG S F G FEV K
Sbjct: 185 LRSQWKLRKVGDKILGDLSYRSAGRSLFPHHGTFEVIK 222
>UniRef50_UPI0000E49395 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 984
Score = 123 bits (296), Expect = 1e-26
Identities = 70/176 (39%), Positives = 105/176 (59%), Gaps = 13/176 (7%)
Frame = +3
Query: 501 QAGESSSDTKSDEXNKDQ----SYQSSLWPWXSVRNKLRSALTEVSVLADVLNIA----K 656
Q+ ++ S K +D+ S+Q WPW SVRN++R+ALTE+SVL+D+L+IA K
Sbjct: 51 QSTDAESPEKETPETEDKEGTTSFQQPQWPWDSVRNQVRAALTEMSVLSDILHIARPANK 110
Query: 657 EKRYMVLDPVQPE-KVESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-- 827
E+ YMVLDPV E + +Q+ +KK G R+ S+ ++
Sbjct: 111 EQPYMVLDPVSVEGNPPKQYALQIVEKKKSLETAASILTSGANRMLQSKRFGVSAEKKNA 170
Query: 828 --DFHIDLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTKAPEEQIAQA 989
DF +L RLR +WRLKK+ N I+GDLS++TAGS+F +G FEV K+ +++I +A
Sbjct: 171 KDDFFGELHRLRMHWRLKKIGNNILGDLSFKTAGSRFWHSGTFEVAKSTDQEIEEA 226
Score = 68.9 bits (161), Expect = 3e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 828 DFHIDLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTKAPEEQIAQA 989
DF +L RLR +WRLKK+ N I+GDLS++TAGS+F +G FEV K+ +++I +A
Sbjct: 510 DFFGELHRLRMHWRLKKIGNNILGDLSFKTAGSRFWHSGTFEVAKSTDQEIEEA 563
>UniRef50_Q2QLK7 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
Expressed protein - Oryza sativa subsp. japonica (Rice)
Length = 655
Score = 40.7 bits (91), Expect = 0.083
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +3
Query: 522 DTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLN-IAKEKRYMVLDPVQPEK 698
D K + + Q Q WPW + L+ A E+SV+ D+++ + V ++P+
Sbjct: 54 DAKKPKKDTAQQQQQQAWPWQGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKS 113
Query: 699 VESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMPDFHIDLLRLRQNWRLKK 878
+ + +V ++ A + + F+ L+RL+QNW++K+
Sbjct: 114 LPTETLVDTAVSAATKLQRVRHLSRYFKQ-SAKTMEQQFQKESRFYGSLIRLQQNWKVKR 172
>UniRef50_Q9NAL4 Cluster: Mediator of RNA polymerase II
transcription subunit 17; n=2; Caenorhabditis|Rep:
Mediator of RNA polymerase II transcription subunit 17 -
Caenorhabditis elegans
Length = 728
Score = 40.3 bits (90), Expect = 0.11
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 840 DLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
+L +R+ WR++KV + I GDLSY G K+ +F++++
Sbjct: 279 ELREMREIWRVRKVGDYICGDLSYHIFGWKYDTPAIFDISR 319
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,018,017
Number of Sequences: 1657284
Number of extensions: 12768455
Number of successful extensions: 26208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26194
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 136868624542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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