Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L20.2
         (1326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    30   0.82 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   4.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   5.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   5.8  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 840 DLLRLRQNWRLKKVSNT-IIGDLSYRTAGSKFSQTGVFEVTK-----APEEQIAQAMS 995
           D+  + +NW + K+S+T +IGD +  T     SQ   F +++      P  QIA   S
Sbjct: 767 DVRNILENWEIGKISSTYVIGDSAVETEDPSSSQFSDFYISQQQSSVLPSSQIATVFS 824


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 489 CNVKQAGESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKE 659
           C  K+   +  + +SD     QS  S+LW      NKL+ +  E S   D  NI +E
Sbjct: 246 CKQKEVFSAEKEKRSDHLKSIQSEVSNLW------NKLQVSPNEQSQFGDSSNINQE 296


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 792  ASEXMRMARNMPDFHIDLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTKAPE 971
            AS    + RN+       L L + WR   ++N    D+ +  +    S  G++ V + P 
Sbjct: 563  ASAHRNVYRNIHSIRRHYLSLSEGWRFDHIANW-TDDVYFPDSQPYASPMGLYSVLRGPM 621

Query: 972  EQIAQAMSMT 1001
            ++I    S+T
Sbjct: 622  KEIQDFDSIT 631


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 861 NWRLKKVSNT-IIGDLSYRTAGSKFSQTGVFEVTKAPE 971
           +WR+K + +  ++GDL Y T  +  SQ       +AP+
Sbjct: 477 SWRIKNLGDRPVVGDLVYSTESNGLSQKSPIVDPEAPD 514


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 492 NVKQAGESSSDTKSDEXNKDQ--SYQSSL 572
           N KQ   S +DT++D   +DQ  SY S+L
Sbjct: 512 NTKQENNSDTDTENDSVEEDQVTSYSSAL 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,507
Number of Sequences: 5004
Number of extensions: 50737
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)