Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L20.2
         (1326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157...    38   0.013
07_01_1058 - 9292890-9293655,9293831-9294600                           29   6.2  

>12_02_1262 +
           27415191-27415279,27415367-27415565,27415635-27415775,
           27415939-27416003,27416111-27416489,27416688-27417149,
           27417226-27417546,27418184-27418501
          Length = 657

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
 Frame = +3

Query: 522 DTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPVQPEKV 701
           D K  + +  Q  Q   WPW  +   L+ A  E+SV+ D+++  ++  Y+++     + V
Sbjct: 54  DAKKPKKDTAQQQQQQAWPWQGMMESLQQAQQELSVVIDLISTRRQS-YLIMQVEANDAV 112

Query: 702 ESRPMVQVYGRK-KXXXXXXXXXXXGMERLR--ASEXMRMARNMPDFHIDLLRLRQNWRL 872
               M++      +            ++R+R  +    + A+ M        RL+QNW++
Sbjct: 113 AVAGMLKPKSLPTETLVDTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRLQQNWKV 172

Query: 873 KK 878
           K+
Sbjct: 173 KR 174


>07_01_1058 - 9292890-9293655,9293831-9294600
          Length = 511

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
 Frame = -2

Query: 836 VEIWHVPRHPHXLAGSETFHA--GLKD----GSGGAQCLLPSVDLNHGSTFNFFR----- 690
           +E W +   PH +   + FHA  G K+    G GG + LL    +++GS   +       
Sbjct: 223 LEDWEIEFGPHRVLYKDLFHATEGFKNSCILGIGGGELLLVYDYMSNGSLDRYLHDEEGQ 282

Query: 689 --LDWVK--HHIPLLLSNIQYISQ 630
             LDWVK  H I  + S + Y+ +
Sbjct: 283 CSLDWVKRIHIIKGVASGLLYLHE 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,646,564
Number of Sequences: 37544
Number of extensions: 377919
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4155355764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)