Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L20.2
         (1326 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021101-1|AAH21101.1|  651|Homo sapiens cofactor required for S...   128   4e-29
AK001674-1|BAA91827.1|  651|Homo sapiens protein ( Homo sapiens ...   128   4e-29
AF117657-1|AAD22031.2|  651|Homo sapiens thyroid hormone recepto...   128   4e-29
AF105421-1|AAD30856.1|  652|Homo sapiens vitamin D3 receptor int...   128   4e-29
AK022156-1|BAB13973.1|  145|Homo sapiens protein ( Homo sapiens ...    71   1e-11

>BC021101-1|AAH21101.1|  651|Homo sapiens cofactor required for Sp1
           transcriptional activation, subunit 6, 77kDa protein.
          Length = 651

 Score =  128 bits (309), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
 Frame = +3

Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
           G  SS  + DE    + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72  GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130

Query: 687 QPEKV---ESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-DFHIDLLRL 854
             + +   ++   +Q+  +KK           G ERL  S        +  DF+ +LLRL
Sbjct: 131 SQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRL 190

Query: 855 RQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
           RQ+W+L+KV + I+GDLSYR+AGS F   G FEV K
Sbjct: 191 RQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIK 226


>AK001674-1|BAA91827.1|  651|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10812 fis, clone NT2RP4000975. ).
          Length = 651

 Score =  128 bits (309), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
 Frame = +3

Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
           G  SS  + DE    + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72  GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130

Query: 687 QPEKV---ESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-DFHIDLLRL 854
             + +   ++   +Q+  +KK           G ERL  S        +  DF+ +LLRL
Sbjct: 131 SQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRL 190

Query: 855 RQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
           RQ+W+L+KV + I+GDLSYR+AGS F   G FEV K
Sbjct: 191 RQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIK 226


>AF117657-1|AAD22031.2|  651|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP80
           protein.
          Length = 651

 Score =  128 bits (309), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
 Frame = +3

Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
           G  SS  + DE    + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72  GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130

Query: 687 QPEKV---ESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-DFHIDLLRL 854
             + +   ++   +Q+  +KK           G ERL  S        +  DF+ +LLRL
Sbjct: 131 SQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRL 190

Query: 855 RQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
           RQ+W+L+KV + I+GDLSYR+AGS F   G FEV K
Sbjct: 191 RQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIK 226


>AF105421-1|AAD30856.1|  652|Homo sapiens vitamin D3 receptor
           interacting protein protein.
          Length = 652

 Score =  128 bits (309), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
 Frame = +3

Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
           G  SS  + DE    + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72  GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130

Query: 687 QPEKV---ESRPMVQVYGRKKXXXXXXXXXXXGMERLRASEXMRMARNMP-DFHIDLLRL 854
             + +   ++   +Q+  +KK           G ERL  S        +  DF+ +LLRL
Sbjct: 131 SQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRL 190

Query: 855 RQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
           RQ+W+L+KV + I+GDLSYR+AGS F   G FEV K
Sbjct: 191 RQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIK 226


>AK022156-1|BAB13973.1|  145|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12094 fis, clone HEMBB1002607, highly similar to
           Homo sapiens vitamin D3 receptor interacting protein
           (DRIP80) ).
          Length = 145

 Score = 70.5 bits (165), Expect = 1e-11
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +3

Query: 507 GESSSDTKSDEXNKDQSYQSSLWPWXSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPV 686
           G  SS  + DE    + +Q SLWPW SVRN LRSALTE+ VL DVL+I ++K++M LDPV
Sbjct: 72  GAGSSADQDDEEGVVK-FQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPV 130

Query: 687 QPE 695
             +
Sbjct: 131 SQD 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,268,797
Number of Sequences: 237096
Number of extensions: 2115308
Number of successful extensions: 7873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7864
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19211134270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)