Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L20.2
         (1326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    40   0.003

>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +3

Query: 840 DLLRLRQNWRLKKVSNTIIGDLSYRTAGSKFSQTGVFEVTK 962
           +L  +R+ WR++KV + I GDLSY   G K+    +F++++
Sbjct: 279 ELREMREIWRVRKVGDYICGDLSYHIFGWKYDTPAIFDISR 319



 Score = 33.5 bits (73), Expect = 0.34
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +3

Query: 576 PWXSVRNKLRSALTEVSVLADVLNIAKEKRYM----VLDPV 686
           PW SV   L  +L +++ L DV+++ K   YM    VLDP+
Sbjct: 111 PWSSVAKYLHESLNQLNSLLDVISVTKSTDYMKALTVLDPI 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,760
Number of Sequences: 27780
Number of extensions: 301385
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3715184046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)