Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L18.2
         (1257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   9.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   9.2  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 449 GGXGVXXXGXFXASXXXXGCGXGXSGCXXGVXXXXRX*GGXPGNXGXXGG 598
           GG G    G         GCG G  GC  G        GG  G  G  GG
Sbjct: 84  GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 133


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 449 GGXGVXXXGXFXASXXXXGCGXGXSGCXXGVXXXXRX*GGXPGNXGXXGG 598
           GG G    G         GCG G  GC  G        GG  G  G  GG
Sbjct: 84  GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 133


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +2

Query: 449 GGXGVXXXGXFXASXXXXGCGXGXSGCXXGVXXXXRX*GGXPGNXGXXG 595
           GG G    G         GCG G  GC  G        GG  G  G  G
Sbjct: 137 GGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGG 185


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 17/67 (25%), Positives = 21/67 (31%)
 Frame = -1

Query: 597 PPXXPXFPGXPPYXLXNXXTPXXQPDXPXPXPXXXXEAXXCPXXXTPXPPXLXRFPKALK 418
           PP    +P  PP        P   P  P P P              P PP + R+P  + 
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM-RYPGGMP 348

Query: 417 TSPXXPY 397
             P   Y
Sbjct: 349 PPPPPRY 355


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 17/67 (25%), Positives = 21/67 (31%)
 Frame = -1

Query: 597 PPXXPXFPGXPPYXLXNXXTPXXQPDXPXPXPXXXXEAXXCPXXXTPXPPXLXRFPKALK 418
           PP    +P  PP        P   P  P P P              P PP + R+P  + 
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM-RYPGGMP 358

Query: 417 TSPXXPY 397
             P   Y
Sbjct: 359 PPPPPRY 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,935,724
Number of Sequences: 27780
Number of extensions: 54503
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)